View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17723_low_26 (Length: 291)
Name: NF17723_low_26
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 47286348 - 47286064
Alignment:
| Q |
1 |
atatagtatcagaattcatagtaccttgtggatttggcctcggttcatctggagcaggcacattcaactcatgataaaatggatacaactcatacctaat |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47286348 |
atatagtatcagaattcacagtaccttgtggatttggcctcggttcatctggagcaggcacattcaactcatgataaaatggatacaactcatacctaat |
47286249 |
T |
|
| Q |
101 |
attacaactaggaataagaactcttgctccttgttttccactacagcaagatggtaaataattagttgctattttgaggcatttttcgcatcctgaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47286248 |
attacaactaggaataagaactcttgctccttgttttccactacagcaagatggtatataattagttgctattttgaggcacttttcgcatcctgaattt |
47286149 |
T |
|
| Q |
201 |
gacaaatccggtgtacactgtgcaagtgtatacaatgtttgaaaactagaaaaatttgccacttttgttccaaacttcttctcac |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47286148 |
gacaaatccggtgtacactgtgcaagtgtatacaatgtttgaaaactagaaaaatttgccacttttgttccaaacttcttgtcac |
47286064 |
T |
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