View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17723_low_27 (Length: 287)
Name: NF17723_low_27
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_low_27 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 38142401 - 38142671
Alignment:
| Q |
18 |
aggatcagttgagacaacctgatcagcatgagtataaaacataatgttacttggtttaaacatatttaataatctgcatcattagactcaagtgtctaat |
117 |
Q |
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| T |
38142401 |
aggaccagttgagacaacctgatcagcatgagtataaaacataatgttacttggtttaaacatatttaataatctgcatcattagactcaagtgtctaat |
38142500 |
T |
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| Q |
118 |
taattaatcaattatgaattgacataatcaatctataagtga-ttaattagatgatttaaacattttaggttgtcagatagataaatgtgaaaacataaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38142501 |
taattaatcaattatgaattgacataatcaatctataagtgatttaattagatgatttaaacattttaggttgtcggatagataaatgtgaaaacataaa |
38142600 |
T |
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| Q |
217 |
taaacnnnnnnnttaccttggttcgcctcgagtgtaatcttaccttgatttcgaacacactgtctcatatt |
287 |
Q |
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| T |
38142601 |
taaacaaaaaaattaccttggttcgcctcgagtgtaatcttaccttgatttccaacacactgtctcatatt |
38142671 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 25189476 - 25189444
Alignment:
| Q |
117 |
ttaattaatcaattatgaattgacataatcaat |
149 |
Q |
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| T |
25189476 |
ttaattaatcaattatgaattgaaataatcaat |
25189444 |
T |
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