View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17723_low_34 (Length: 242)
Name: NF17723_low_34
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 47286361 - 47286587
Alignment:
| Q |
1 |
tctgatataattcatcttttacggtcgcatagacataaaaataatttgattttgatggtgtagctcatttatcctgaaacnnnnnnncaaagtcctgctt |
100 |
Q |
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| T |
47286361 |
tctgatataattcatcttttacggtcgcaaagacataaaaataatttgattttgatggtgtagctcatttatcctgaaactttttttcaaagtcctgctt |
47286460 |
T |
|
| Q |
101 |
actttccattctttgcatttatgattcacatgaaaattatgattagctggtgatta-gattaagttgattcaatttttgcaggnnnnnnntcacggaact |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
47286461 |
actttccattctttgcatttatgattcacatgaaaattatgattagctggtgattatgattaagttgattcaatttttgcaggaaaaaaatcacggaact |
47286560 |
T |
|
| Q |
200 |
caatagtgttaattgttgctatagtag |
226 |
Q |
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|| |||||||||||||||||||||||| |
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| T |
47286561 |
cagtagtgttaattgttgctatagtag |
47286587 |
T |
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