View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17723_low_42 (Length: 201)

Name: NF17723_low_42
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17723_low_42
NF17723_low_42
[»] chr2 (12 HSPs)
chr2 (1-193)||(9292471-9292663)
chr2 (8-189)||(9316578-9316759)
chr2 (1-134)||(10353664-10353797)
chr2 (1-160)||(9283618-9283777)
chr2 (1-155)||(9275064-9275218)
chr2 (1-134)||(9357723-9357856)
chr2 (1-134)||(10348325-10348458)
chr2 (85-148)||(7115092-7115155)
chr2 (1-57)||(10372404-10372460)
chr2 (97-135)||(9060588-9060626)
chr2 (98-134)||(8572959-8572995)
chr2 (8-160)||(9329149-9329301)
[»] chr3 (1 HSPs)
chr3 (1-139)||(37463041-37463179)
[»] scaffold0667 (1 HSPs)
scaffold0667 (1-134)||(5020-5153)
[»] chr4 (1 HSPs)
chr4 (1-134)||(26575416-26575549)
[»] chr8 (1 HSPs)
chr8 (1-126)||(41966185-41966310)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 9292471 - 9292663
Alignment:
Q  1 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaa 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292471 agggagaaaagggataatccgatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaa 9292570  T
Q  101 atggcgaggaggccgttacatgaaccaataagaggcatgaagctggtacgcgtgataggaacggtcttgaaaggatggttgagtagaataatc 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9292571 atggcgaggaggccgttacatgaaccaataagaggcatgaagctggtacgcgtgataggaacggtcttgaaaggatggttgagtggaataatc 9292663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 9316578 - 9316759
Alignment:
Q  8 aaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaaatggcga 107  Q
    ||||||||||| | ||||||| | |||||||||||| ||| |||||||||||| | | ||||||||||| ||||   |||||| | ||||||||||||||    
T  9316578 aaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcatgaaagcgatttgaccattggaaatggcga 9316677  T
Q  108 ggaggccgttacatgaaccaataagaggcatgaagctggtacgcgtgataggaacggtcttgaaaggatggttgagtagaat 189  Q
    | ||||||||||||||||| | ||||| ||| | |||| ||  ||||| |||| | || |||||||||||||||||| ||||    
T  9316678 gaaggccgttacatgaaccgagaagagccattatgctgttatacgtgacaggagctgtgttgaaaggatggttgagtggaat 9316759  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 10353664 - 10353797
Alignment:
Q  1 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaa 100  Q
    |||||||||||||||||||| ||| ||| | ||||| |||||| | | |||||||||||| ||||||| ||||||||||||    |||  ||  | |||     
T  10353664 agggagaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttcgttgggggcgttaggatgcgtgaaagctattacgccgtgggac 10353763  T
Q  101 atggcgaggaggccgttacatgaaccaataagag 134  Q
    |||||||||||||||||||||||||| |||||||    
T  10353764 atggcgaggaggccgttacatgaaccgataagag 10353797  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 9283777 - 9283618
Alignment:
Q  1 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaa-gcagatttggctattgga 99  Q
    |||||||||||||||||||| ||||||| | ||||||| |||| ||| |||||||||  | | | |||  |||||||| || ||| ||| ||| |||| |    
T  9283777 agggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttcagttgcgtcgtttggatgcgtaaaagca-attgggccattgta 9283679  T
Q  100 aatggcgaggaggccgttacatgaaccaataagaggcatgaagctggtacgcgtgatagga 160  Q
     |||||||||||||||||||||||||||||||||| | ||| |||| || |||||| ||||    
T  9283678 gatggcgaggaggccgttacatgaaccaataagagccttgatgctgttaagcgtgaaagga 9283618  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 9275064 - 9275218
Alignment:
Q  1 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaa 100  Q
    |||||||||||||||||||| |||||||   |||||||||||| ||| ||| ||||| || |   ||| ||||||| |||||  | |||||| ||||||     
T  9275064 agggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcatttgcatcgtcaggatgcctgaaggcggtttggccattggag 9275163  T
Q  101 atggcgaggaggccgttacatgaaccaataagaggcatgaagctggtacgcgtga 155  Q
    || || | |||||||||||||||||| ||||||| ||||  |||| |||||||||    
T  9275164 atagcaatgaggccgttacatgaacctataagagccatggtgctgttacgcgtga 9275218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 9357723 - 9357856
Alignment:
Q  1 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaa 100  Q
    |||||| |||||||||||   ||||||| |  ||||| ||||| ||| || ||||||||| | ||||| ||||||| ||||   ||||| || ||||||     
T  9357723 agggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgccattggag 9357822  T
Q  101 atggcgaggaggccgttacatgaaccaataagag 134  Q
    |||||||||||||||||||||||||| |||||||    
T  9357823 atggcgaggaggccgttacatgaaccgataagag 9357856  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 10348325 - 10348458
Alignment:
Q  1 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaa 100  Q
    ||||||||||||||||||   ||||||| | |||||||||||| ||| ||||||||||||  ||  || ||||||||||||   ||||   |   ||||     
T  10348325 agggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgattacccctgtggag 10348424  T
Q  101 atggcgaggaggccgttacatgaaccaataagag 134  Q
    |||||||||||||||||||||||||| |||||||    
T  10348425 atggcgaggaggccgttacatgaaccgataagag 10348458  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 7115155 - 7115092
Alignment:
Q  85 gatttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatgaagctggta 148  Q
    |||||||| |||||| |||||||||||||||||||||||||| ||||||  |||| ||||||||    
T  7115155 gatttggccattggagatggcgaggaggccgttacatgaaccgataagatccatggagctggta 7115092  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10372404 - 10372460
Alignment:
Q  1 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttc 57  Q
    ||||||||||||||||| |||||||||| | |||||||||||| ||| |||||||||    
T  10372404 agggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttc 10372460  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 9060626 - 9060588
Alignment:
Q  97 ggaaatggcgaggaggccgttacatgaaccaataagagg 135  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  9060626 ggaaagggcgaggaggccgttacatgaaccaataagagg 9060588  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 8572995 - 8572959
Alignment:
Q  98 gaaatggcgaggaggccgttacatgaaccaataagag 134  Q
    ||||||||||||||||||||||||||||| |||||||    
T  8572995 gaaatggcgaggaggccgttacatgaaccgataagag 8572959  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 9329149 - 9329301
Alignment:
Q  8 aaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaaatggcga 107  Q
    ||||||||||| | ||||||| | |||||||||||| ||| |||||||||||| ||| ||| ||| | | | ||   |||||||| || ||| || || |    
T  9329149 aaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaaaagcgatttggccataggagatagcaa 9329248  T
Q  108 ggaggccgttacatgaaccaataagaggcatgaagctggtacgcgtgatagga 160  Q
     ||||||||| |||||||| ||||||  ||||  |||| ||||||||| ||||    
T  9329249 tgaggccgttgcatgaaccgataagacccatgttgctgttacgcgtgacagga 9329301  T

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Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 37463041 - 37463179
Alignment:
Q  1 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaa 100  Q
    |||||||||||||||||||  ||||||| | |||||||||||| ||| |||||||||||| | ||||| ||||||||||||   |||||||| ||||||     
T  37463041 agggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggag 37463140  T
Q  101 atggcgaggaggccgttacatgaaccaataagaggcatg 139  Q
    || ||||||||||||||||||||||| ||||||| ||||    
T  37463141 atagcgaggaggccgttacatgaaccgataagagccatg 37463179  T

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Target: scaffold0667 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 5020 - 5153
Alignment:
Q  1 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtga-agcagatttggctattgga 99  Q
    ||||||||||||||||||   ||||||| |  ||||||||||| ||| |||||||||||| | ||||| ||||||  ||| ||| ||||| ||  |||||    
T  5020 agggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttggcggcgttaggatgtctgagagc-gatttcgccgttgga 5118  T
Q  100 aatggcgaggaggccgttacatgaaccaataagag 134  Q
    || |||||||||||||||||||||||| |||||||    
T  5119 aacggcgaggaggccgttacatgaaccgataagag 5153  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 26575416 - 26575549
Alignment:
Q  1 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaa 100  Q
    |||||||||||||||||||| || ||||   |||| ||||||| ||| || ||||||||| |||||||  |||||||||||    |||  ||  | |||     
T  26575416 agggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttgggggcgttgggatgcgtgaaagccattacgccgtgggac 26575515  T
Q  101 atggcgaggaggccgttacatgaaccaataagag 134  Q
    |||||||||||||||||||||||||| |||||||    
T  26575516 atggcgaggaggccgttacatgaaccgataagag 26575549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 41966310 - 41966185
Alignment:
Q  1 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaa 100  Q
    |||||||||||||||||||| |||||||    ||||||||||| ||| ||||||||| ||   | ||||||| |  | |||   ||||| || ||||||     
T  41966310 agggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattggag 41966211  T
Q  101 atggcgaggaggccgttacatgaacc 126  Q
    |||  |||||||||||||||||||||    
T  41966210 atgcagaggaggccgttacatgaacc 41966185  T

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