View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17723_low_7 (Length: 521)
Name: NF17723_low_7
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 2589091 - 2588585
Alignment:
| Q |
1 |
tttaagtaaaaaccatgctacatagctaaacctatatgctaagtgaatcaagattcaagataagatgcatgacaaatgtagatatagactaaagattcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
2589091 |
tttaagtaaaaaccatgctacatagctaaacctatatgctaagtgaatcaagattcaagataagatgcatggcaaatgtagatatggactaaagattcat |
2588992 |
T |
|
| Q |
101 |
attgattgagtagttagttttgtatcaaatcaagatactattcacatgtatagtaagatactaataaccatgattacctgcatgaatagtgatctgattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588991 |
attgattgagtagttagttttgtatcaaatcaagatattattcacatgtatagtaagatactaataaccatgattacctgcatgaatagtgatctgattt |
2588892 |
T |
|
| Q |
201 |
gcaacagcaggtactgcagcttgctcatgttggtcaagaggtgcaccatgttggaattggttgctgttgttgctacttcctcctatttggtcagcctttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
2588891 |
gcaacagcaggtactgcagcttgctcatgttggtcaagaggtgcaccatgttggaattggttgctgtagttgctgcttcctcctatttggtcagcctttc |
2588792 |
T |
|
| Q |
301 |
tcttattagcacccctactctcaataacaagattgttcattgaagaacctccatgatcatggtcttggtaatgtggatcaatgcatatcgaagtctcgtg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2588791 |
tcttattagcacccctactctcaataacaagattgttcattgaagaacctccatgatcatggtcttggtaatgtggatcaatgcatattgaagtctcgtg |
2588692 |
T |
|
| Q |
401 |
atgagaagaattagtttcttcaagttgatgaaccatgttggtatcagaaccctcacatgatgataaaggttttcctagattgtgctcatcacattccaca |
500 |
Q |
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| T |
2588691 |
atgagaagaattagtttcttcaagttgatgaaccatgttggtatcagaaccctcacatgatgataaaggtttttctagattgtgctcatcacattccaca |
2588592 |
T |
|
| Q |
501 |
tcataat |
507 |
Q |
| |
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||||||| |
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| T |
2588591 |
tcataat |
2588585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 36251274 - 36251229
Alignment:
| Q |
118 |
ttttgtatcaaatcaagatactattcacatgtatagtaagatacta |
163 |
Q |
| |
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|||| |||||| |||||||| |||||||||||||||||||||||| |
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| T |
36251274 |
ttttatatcaattcaagatatgattcacatgtatagtaagatacta |
36251229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 245
Target Start/End: Complemental strand, 20920891 - 20920806
Alignment:
| Q |
157 |
gatactaataaccatgattacctgcatgaatagtgatctgatttgcaacagcaggtactgcagcttgctcatgttggtcaagaggtgca |
245 |
Q |
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| T |
20920891 |
gataataataaccatgattacctgtatgatgaatgatctgatttgcaa---caggtaccgcaggttgcacacgttgggcaagaggtgca |
20920806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 14161110 - 14161058
Alignment:
| Q |
116 |
agttttgtatcaaatcaagatactattcacatgtatagtaagatactaataac |
168 |
Q |
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||||||||||| ||||||||||| | ||| || |||||||||||||| ||||| |
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| T |
14161110 |
agttttgtatcgaatcaagatacgactcaaatctatagtaagatactgataac |
14161058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 27329256 - 27329329
Alignment:
| Q |
100 |
tattgattgagtagttagttttgtatcaaatcaagatactattcacatgtatagtaagatactaataaccatgatt |
175 |
Q |
| |
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|||||||||||| ||||||||||||| |||| | |||| ||| |||||||| |||||||| | |||||||||||| |
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| T |
27329256 |
tattgattgagt--ttagttttgtatcgaatcgatatacaattaacatgtatcgtaagatattgataaccatgatt |
27329329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 18344032 - 18343987
Alignment:
| Q |
297 |
tttctcttattagcacccctactctcaataacaagattgttcattg |
342 |
Q |
| |
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||||||||| ||||||||| | ||||||||| |||||||||||||| |
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| T |
18344032 |
tttctcttactagcacccccattctcaataataagattgttcattg |
18343987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 41335496 - 41335424
Alignment:
| Q |
170 |
atgattacctgcatgaatagtgatctgatttgcaacagcaggtactgcagcttgctcatgttggtcaagaggtgca |
245 |
Q |
| |
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||||||||||| |||| ||||||||||| |||||||| |||| ||||||||| || ||||| ||||||||||| |
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| T |
41335496 |
atgattacctgtatgatgagtgatctgatctgcaacag---gtaccgcagcttgcgcacgttgggcaagaggtgca |
41335424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 41042642 - 41042586
Alignment:
| Q |
118 |
ttttgtatcaaatcaagatactattcacatgtatagtaagatactaataaccatgat |
174 |
Q |
| |
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|||| |||| ||||||||||| | || ||||||| |||||||||| ||||||||||| |
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| T |
41042642 |
ttttctatcgaatcaagatacgactcgcatgtatcgtaagatactgataaccatgat |
41042586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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