View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17723_low_8 (Length: 500)
Name: NF17723_low_8
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17723_low_8 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] chr5 (5 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 122 - 500
Target Start/End: Complemental strand, 6136687 - 6136308
Alignment:
| Q |
122 |
aaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaatattaatta |
221 |
Q |
| |
|
||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
6136687 |
aaattataggg-tactacaaagttaaaactaataaatgatgtgactaaacgaaatataaaataaaatcaggtaactgcatgtacaaaaaaatattaatta |
6136589 |
T |
|
| Q |
222 |
tatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataatgatatggagtgtt-- |
319 |
Q |
| |
|
|||| |||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6136588 |
tatctataattttagtaactaaaccgacgcgtcataagctaaaaacaagtgaataatctaattgaggcactaaaattaaaataatgatatggagtgttat |
6136489 |
T |
|
| Q |
320 |
gaataataaatagtcatatattttgcttttgcatattaaaagtcacaatattttaccttagtttatgagtctcatttctttctaattcttattctctatg |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6136488 |
gaataataaatagtcatatattttgcttttgcatattaaaagttacaatattttaccttagtttatgagtctcctttctttctaattcttattctctatg |
6136389 |
T |
|
| Q |
420 |
aataatctctccatctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactattaacacaagtaaaatcaat |
500 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6136388 |
aataatttctccatctcaatttgtaaacaaaaaccatctcttcatctcaattatgcaactattaacacaaataaaatcaat |
6136308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 227 - 440
Target Start/End: Complemental strand, 2947254 - 2947040
Alignment:
| Q |
227 |
ataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataatgatatggagtgtt--gaata |
324 |
Q |
| |
|
|||||||||||||| |||| | | ||||| |||||||| |||||| ||||| ||||||| ||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
2947254 |
ataattttagcaaccaaactgatgagtcatgagtgaaaagcaagtggataatgtaattgaatcactaaaattaaaataatgatattgagtgttatgaata |
2947155 |
T |
|
| Q |
325 |
ataaatagtcatatattttgcttttgcatattaaaagtcacaatattttaccttagtttatgagtctcatttctttctaattcttattctctatgaataa |
424 |
Q |
| |
|
||||| ||| | || ||||||||| ||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
2947154 |
ataaaaagttagattttttgctttggcatattaaaagtcacaatattttacctt-gtttttgagtctcttttctttctaattcttattctctatgactaa |
2947056 |
T |
|
| Q |
425 |
tctctccatctcaatt |
440 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2947055 |
tctctccatctcaatt |
2947040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 107 - 412
Target Start/End: Original strand, 17404478 - 17404767
Alignment:
| Q |
107 |
tgttagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtac- |
205 |
Q |
| |
|
||||||||||||| ||||| | ||| ||||||||||||||| |||||||||| || |||||| |||||||||| ||||||||| |||| ||| ||| |
|
|
| T |
17404478 |
tgttagttgctgac--aattacaagggcactacaaagtcaaaactaataaatgacgttactaaattaaatataaaacaaaatcagtcaactacatttacc |
17404575 |
T |
|
| Q |
206 |
aaacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataa |
305 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
17404576 |
aaaaaaatattaattacgtccataattttagcaactaaaccgatgagtcatgagtgaaaaacaagtgaataatctaattgatgca--------------- |
17404660 |
T |
|
| Q |
306 |
tgatatggagtgtt--gaataataaatagtcatatattttgcttttgcatattaaaagtcacaatattttaccttagtttatgagtctcatttctttcta |
403 |
Q |
| |
|
||||| ||| || |||||||||| ||||| || |||| | |||||||||||||||| |||||||||||| || |||||||||||| |||||||||| |
|
|
| T |
17404661 |
-tatatgaagtattaagaataataaagagtcaaattttttccatttgcatattaaaagttgcaatattttacc-taatttatgagtctcttttctttcta |
17404758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 135 - 281
Target Start/End: Complemental strand, 2947400 - 2947254
Alignment:
| Q |
135 |
actacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaatattaattatatccataatttt |
234 |
Q |
| |
|
|||||||||| |||| || ||||||| ||| |||| ||||||||||||||||||||| |||| ||||||| || || ||||||||| ||||||||||| |
|
|
| T |
2947400 |
actacaaagttaaaactagtaaatgacatgattaaatgaaatataaaataaaatcagtcaactacatgtaccaaaaattattaattacgtccataatttt |
2947301 |
T |
|
| Q |
235 |
agcaactaaacctacgcgtcataagtgaaaaacaagtgaataatcta |
281 |
Q |
| |
|
|||||| ||| | ||||| |||||||| |||||| |||||||| |
|
|
| T |
2947300 |
agcaaccaaattgttgagtcatgagtgaaaagcaagtggataatcta |
2947254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 482
Target Start/End: Original strand, 17404972 - 17405022
Alignment:
| Q |
431 |
catctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactatt |
482 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
17404972 |
catctcaatttgtaaacaaaaaca-tctctccatctcaattatgcaattatt |
17405022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 500
Target Start/End: Complemental strand, 2947057 - 2947011
Alignment:
| Q |
454 |
aatctctccatctcaattatgcaactattaacacaagtaaaatcaat |
500 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
2947057 |
aatctctccatctcaattatgaaactattaacacaagaacaatcaat |
2947011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 109 - 482
Target Start/End: Complemental strand, 19570181 - 19569808
Alignment:
| Q |
109 |
ttagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaa |
208 |
Q |
| |
|
||||||||||| |||||| || || |||||| |||||||| |||||||||| || |||||| ||||||||||||||||||||| |||| |||||| | |
|
|
| T |
19570181 |
ttagttgctgacaaaattacagaggcactacacagtcaaaactaataaatgacgttactaaatgaaatataaaataaaatcagtcaactacatgtatcga |
19570082 |
T |
|
| Q |
209 |
caaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataatga |
308 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| | | ||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19570081 |
aaaatattaattacgtccataattttagcaactaaacggatgagtcatgagtgaaaagaaagtgaataatctaattgaggcactaaaattaaaataaaga |
19569982 |
T |
|
| Q |
309 |
tatggagtgtt--gaataataaatagtcatatattttgcttttgcatattaaaagtcacaatattttaccttagtttatgagtctcatttctttctaatt |
406 |
Q |
| |
|
||| |||||| |||||||||| ||||| || |||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
19569981 |
tatttagtgttaagaataataaagagtcagattttttgcatttgcatattaaaagtgttaatattttacc-tagtttatgagtctcttttctttctaatt |
19569883 |
T |
|
| Q |
407 |
cttattctctatgaataatctctccatctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactatt |
482 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||||||||||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
19569882 |
cttattctctatgactaacctctctatctcaatttgtaaacaaaaac-atctcttcatctcaattatgcaactatt |
19569808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 162 - 451
Target Start/End: Complemental strand, 1645594 - 1645302
Alignment:
| Q |
162 |
gtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtg |
261 |
Q |
| |
|
||||||||| ||||||||||||||||| | | |||| |||||||||| |||||||||||| || |||||||||||||||| |||||||| ||||| ||| |
|
|
| T |
1645594 |
gtgactaaatgaaatataaaataaaattactcaactacatgtacaaaaaaatattaattacattcataattttagcaacttaacctacgagtcatgagta |
1645495 |
T |
|
| Q |
262 |
aaaaacaagtgaataatctaattgaggcactaaaattaaaataatgatatggagtgt--tgaataataaatagtcatatattttgcttttgcatatt--a |
357 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||| ||||| || ||||||||||| ||||| | |
|
|
| T |
1645494 |
aaaagcaagtgaattatctaattgaggtactaaaattgaaataatgataaggagtgttatgaataataaagagtcagattttttgcttttgtatattaaa |
1645395 |
T |
|
| Q |
358 |
aaagtcacaatattttaccttagtttatgagtctcatttctttctaattcttattctctatgaataatctctccatctcaatttgtaaacaaaa |
451 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
1645394 |
aaagtcacaatattttacc-tagtttgtgagtctcttttctttctaattcttattttctatgactaatctctccatctcaatttataaagaaaa |
1645302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 136 - 483
Target Start/End: Complemental strand, 24579320 - 24578992
Alignment:
| Q |
136 |
ctacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaa-taaaatcagttaactgcatgtacaaacaaatattaattatatccataatttt |
234 |
Q |
| |
|
|||||||||||||| |||||| ||| |||| |||| ||||||||||| |||||||| | |||| ||||||| || ||||||||| || ||| |||||||| |
|
|
| T |
24579320 |
ctacaaagtcaaaactaataattgacgtgattaaatgaaatataaaaataaaatcaatcaactacatgtaccaaaaaatattaactacatctataatttt |
24579221 |
T |
|
| Q |
235 |
agcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataatgatatggagtgt--tgaataataaatag |
332 |
Q |
| |
|
|||||||||||||| | ||||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||||||| || |
|
|
| T |
24579220 |
agcaactaaacctatgagtcatgagtgaaaagcaaatgaattatctaattgaggcactaaaattaaaataatgatattgaatgttatgaataataaagag |
24579121 |
T |
|
| Q |
333 |
tcatatattttgcttttgcatattaaaagtcacaatattttaccttagtttatgagtctcatttctttctaattcttattctctatgaataatctctcca |
432 |
Q |
| |
|
||| || |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
24579120 |
tcagattttttgcttttacatattaaaagtcacaatattt----------------------ttctttctaattcttattctctatggctaatctatcca |
24579043 |
T |
|
| Q |
433 |
tctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactatta |
483 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24579042 |
tctcaaattgtaaacaaaaaacatctctccatctcaattatgcaactatta |
24578992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 110 - 412
Target Start/End: Complemental strand, 3573446 - 3573128
Alignment:
| Q |
110 |
tagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaat-----------cagttaactg |
198 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||| || |||||||||| ||||||||| ||||||||||| ||||| |||| |||| |
|
|
| T |
3573446 |
tagttgctgacgaaattacggggccactacaaagtcataactaataaatgacgtgactaaatgaaatataaaaaaaaataaaaaaaatatcagtcaacta |
3573347 |
T |
|
| Q |
199 |
catgtac---aaacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaa |
295 |
Q |
| |
|
||||||| ||| |||||||||||| |||| ||||||||||||||||| | | || || ||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
3573346 |
catgtaccaaaaaaaaatattaattacatccgtaattttagcaactaaatcaatcagttatgagtgaaaaacaagtgaataatctaattcaggcaataaa |
3573247 |
T |
|
| Q |
296 |
attaaaataatgatatggagtgt--tgaataataaa-tagtcatatattttgcttttgcatattaaaagtcacaatattttaccttagtttatgagtctc |
392 |
Q |
| |
|
||||||| ||||||||||||||| | || |||||| ||||| || ||||||||||||||||||||||||||||||||||| | |||||| ||||| || |
|
|
| T |
3573246 |
attaaaacaatgatatggagtgttataaacaataaaggagtcagattttttgcttttgcatattaaaagtcacaatatttta-catagtttgtgagtatc |
3573148 |
T |
|
| Q |
393 |
atttctttctaattcttatt |
412 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
3573147 |
ttttctttataattcttatt |
3573128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 399 - 486
Target Start/End: Original strand, 37080954 - 37081041
Alignment:
| Q |
399 |
ttctaattcttattctctatgaataatctctccatctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactattaaca |
486 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||| || |||||||| ||||||||||||| |||||| |
|
|
| T |
37080954 |
ttctaattctcattctctatgtttaatctctccatctcaatttgtaaacaaaaaatatttctccatcacaattatgcaactgttaaca |
37081041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 358
Target Start/End: Original strand, 37080832 - 37080935
Alignment:
| Q |
258 |
agtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataatgatatggagtgt--tgaataataaatagtcatatattttg-cttttgcata |
354 |
Q |
| |
|
|||||||| ||||| |||| |||||||| ||||||||||||||||||||||| |||||||| |||||||| || ||| | || ||||| |||||||||| |
|
|
| T |
37080832 |
agtgaaaagcaagtaaatagtctaattggggcactaaaattaaaataatgatgtggagtgttatgaataatgaagagttagattttttgccttttgcata |
37080931 |
T |
|
| Q |
355 |
ttaa |
358 |
Q |
| |
|
|||| |
|
|
| T |
37080932 |
ttaa |
37080935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 37078727 - 37078786
Alignment:
| Q |
137 |
tacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaact |
197 |
Q |
| |
|
||||||||||||| |||||||||| |||||| || |||||||| ||||||||||||||||| |
|
|
| T |
37078727 |
tacaaagtcaaaactaataaatgacgtgact-aatgaaatatagaataaaatcagttaact |
37078786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 490
Target Start/End: Complemental strand, 1645010 - 1644975
Alignment:
| Q |
455 |
atctctccatctcaattatgcaactattaacacaag |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
1645010 |
atctctccatctcaattatgcaactattaacacaag |
1644975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 500
Target Start/End: Complemental strand, 3564590 - 3564491
Alignment:
| Q |
402 |
taattcttattctctatgaataatctctccatctcaatttgtaaacaaaaccaatc-tctccatctcaattatgcaactattaacacaagtaaaatcaat |
500 |
Q |
| |
|
|||||||||||||||| || |||| ||| ||||||||||||||||||||| ||| ||||||||| ||||| || |||||||||||| | ||||||| |
|
|
| T |
3564590 |
taattcttattctctacgactaatttcttcatctcaatttgtaaacaaaaagcatcttctccatcttaattacataattattaacacaagaacaatcaat |
3564491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 7e-84; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 110 - 488
Target Start/End: Complemental strand, 28539243 - 28538861
Alignment:
| Q |
110 |
tagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaat-----ataaaataaaatcagttaactgcatgta |
204 |
Q |
| |
|
|||||||||| |||||| | ||| |||||||| |||| ||||||||||| |||||||| ||||| |||||||||||||||| |||| |||||| |
|
|
| T |
28539243 |
tagttgctgacaaaattacaagggcactacaaactcaac--taataaatgatatgactaaatgaaatggattataaaataaaatcagtcaactacatgta |
28539146 |
T |
|
| Q |
205 |
caaacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaata |
304 |
Q |
| |
|
| || |||||||||||| ||| |||||||||||||||||||| | | ||||| |||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28539145 |
ccaaaaaatattaattacatcaataattttagcaactaaaccaatgagtcatgagtgaaaagcaagtgaataatcaaattgaggcactaaaattaaaata |
28539046 |
T |
|
| Q |
305 |
atgatatggagtgt--tgaataataaatagtc-atatattttgcttttgcatattaaaagtcacaatattttaccttagtttatgagtctcatttctttc |
401 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||| | |||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
28539045 |
atgatatggaatgttatgaataataaagagtcgggtttttttgcttttgcatattaaacgtcacaatattttac--tagtctatgagtctcatttctttt |
28538948 |
T |
|
| Q |
402 |
taattcttattctctatgaataatctctccatctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactattaacaca |
488 |
Q |
| |
|
||||||||||| ||| | |||| ||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
28538947 |
gaattcttattcgctacaactaatttctccatcttgatttgtaaacaaaaaacatctcttcatctcaattatgcaactattaacaca |
28538861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 122 - 319
Target Start/End: Complemental strand, 2901163 - 2900973
Alignment:
| Q |
122 |
aaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaatattaatta |
221 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| ||| || | |||||| || |||||||||||| |
|
|
| T |
2901163 |
aaattataggggcactacaaagtcaaaactaataaatgacgtgactaaatgaaatataaaataaaattagtcaattacatgtatcaaaaaatattaatta |
2901064 |
T |
|
| Q |
222 |
tatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataatgatatggagtgtt |
319 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2901063 |
catccataattttaacaactaaacc-------aataagtgaaaaacaagtgaataatttaattgagatactaaaattaaaataatgatatggagtgtt |
2900973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 340 - 490
Target Start/End: Complemental strand, 27908816 - 27908667
Alignment:
| Q |
340 |
ttttgcttttgcatattaaaagtcacaatattttaccttagtttatgagtctcatttctttctaattcttattctctatgaataatctctccatctcaat |
439 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| ||| | |||||||||||| |
|
|
| T |
27908816 |
ttttgcttttgcatattaaaagtggcaatattttacct-agtttatgagtctattttctttctaattcttattctcaatgactaaccactccatctcaat |
27908718 |
T |
|
| Q |
440 |
ttgtaaacaaaaccaatctctccatctcaattatgcaactattaacacaag |
490 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27908717 |
ttgtaaacaaaaaatatctctccatctcaattatgcaactattaacacaag |
27908667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 203 - 430
Target Start/End: Original strand, 36848269 - 36848497
Alignment:
| Q |
203 |
tacaaacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaa |
302 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||||||| ||| |||| |||||||| |||||||||||||||||| || |||||||||||||| |
|
|
| T |
36848269 |
tacaaaaaaatattaattacgtcaataattttagcaactaaaccaacgagtcaggagtgaaaagcaagtgaataatctaattaagacactaaaattaaaa |
36848368 |
T |
|
| Q |
303 |
taatgatatggagtgtt--gaataataaatagtcatatattttgcttttgcatattaaaagtcacaatattttaccttagtttatgagtctcatttcttt |
400 |
Q |
| |
|
||||||| | |||||| |||||||||||| | | || |||||| ||||||||||||||||| ||||||||| || |||||| ||||||| ||||||| |
|
|
| T |
36848369 |
gaatgataagaagtgttaagaataataaatattaacattttttgcctttgcatattaaaagtcgcaatatttttcc-tagtttttgagtcttctttcttt |
36848467 |
T |
|
| Q |
401 |
ctaattcttattctctatgaataatctctc |
430 |
Q |
| |
|
|||||||||||||||| || ||| ||||| |
|
|
| T |
36848468 |
ttaattcttattctctacgactaacctctc |
36848497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 320 - 500
Target Start/End: Complemental strand, 2900934 - 2900756
Alignment:
| Q |
320 |
gaataataaatagtcatatattttgcttttgcatattaaaagtcacaatattttaccttagtttatgagtctcatttctttctaattcttattctctatg |
419 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||| ||||||||| ||||||||||||| |||||||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
2900934 |
gaataataatgagtcatatttttttcttttgcat-ttaaaagtcgcaatattttacct-agtttatggatctcttttctttataattcttattctctatg |
2900837 |
T |
|
| Q |
420 |
aataatctctccatctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactattaacacaagtaaaatcaat |
500 |
Q |
| |
|
| ||| ||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| || | ||||||| |
|
|
| T |
2900836 |
actaacctctccaactcaatttgtaaacaaaaaacatctcttcatctcaattatgcaactattaacacgagaacaatcaat |
2900756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 23970634 - 23970700
Alignment:
| Q |
110 |
tagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaat |
176 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||| ||||||||| ||||| |||| ||||| |
|
|
| T |
23970634 |
tagttgctgacaaaattataggggcactacaaagtcaaaactaataaatggtgtgattaaatgaaat |
23970700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 27909104 - 27909039
Alignment:
| Q |
122 |
aaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaa |
187 |
Q |
| |
|
|||||| || || ||| ||||||||||| |||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
27909104 |
aaattacagaggcacttcaaagtcaaaactaataaatgacgtgactaaatgaaatataaaataaaa |
27909039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 1e-76; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 107 - 500
Target Start/End: Complemental strand, 21715048 - 21714662
Alignment:
| Q |
107 |
tgttagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtaca |
206 |
Q |
| |
|
||||||||||||| |||||||| || || ||||||||||||| |||||||||| |||| |||| ||||| ||||||||||||||| |||| ||| | | |
|
|
| T |
21715048 |
tgttagttgctgacaaaattataagg-tattacaaagtcaaaactaataaatgacgtgattaaatgaaatgtaaaataaaatcagtcaactacatatgcc |
21714950 |
T |
|
| Q |
207 |
aacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataat |
306 |
Q |
| |
|
|| |||||||||||| || | |||||||| |||||||| | | | ||||| |||||| | |||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
21714949 |
aaaaaatattaattacattcgtaattttaacaactaaatcgatgagtcatgagtgaacagcaagtgaataatcttattgaggcactgaaattaaaataaa |
21714850 |
T |
|
| Q |
307 |
gatatggagtgtt--gaataataaatagtcatatattttgcttttgcatattaaaagtcacaatattttaccttagtttatgagtctcatttctttctaa |
404 |
Q |
| |
|
|||| |||||||| ||||||||| | || ||||| |||||||||||||||||| |||||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
21714849 |
gatagggagtgttaagaataataa------agattttttgtttttgcatattaaaagtcgcaatattttacc-taatttatgagtct-atttctttctaa |
21714758 |
T |
|
| Q |
405 |
ttcttattctctatgaataatctctccatctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactattaacacaagtaaaatcaat |
500 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||| ||| | ||||||| |
|
|
| T |
21714757 |
ttcttattctctatgactaaccactccatctcaatttgttaacaaaaaatatctctctgtctcagttatgcaactattaacaaaagaacaatcaat |
21714662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 107 - 500
Target Start/End: Complemental strand, 21788963 - 21788577
Alignment:
| Q |
107 |
tgttagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtaca |
206 |
Q |
| |
|
||||||||||||| |||||||| || || ||||||||||||| |||||||||| |||| |||| ||||| ||||||||||||||| |||| ||| | | |
|
|
| T |
21788963 |
tgttagttgctgacaaaattataagg-tattacaaagtcaaaactaataaatgacgtgattaaatgaaatgtaaaataaaatcagtcaactacatatgcc |
21788865 |
T |
|
| Q |
207 |
aacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataat |
306 |
Q |
| |
|
|| |||||||||||| || | |||||||| |||||||| | | | ||||| |||||| | |||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
21788864 |
aaaaaatattaattacattcgtaattttaacaactaaatcgatgagtcatgagtgaacagcaagtgaataatcttattgaggcactgaaattaaaataaa |
21788765 |
T |
|
| Q |
307 |
gatatggagtgtt--gaataataaatagtcatatattttgcttttgcatattaaaagtcacaatattttaccttagtttatgagtctcatttctttctaa |
404 |
Q |
| |
|
|||| |||||||| ||||||||| | || ||||| |||||||||||||||||| |||||||||||| || ||||||||||| |||||||||||| |
|
|
| T |
21788764 |
gatagggagtgttaagaataataa------agattttttgtttttgcatattaaaagtcgcaatattttacc-taatttatgagtct-atttctttctaa |
21788673 |
T |
|
| Q |
405 |
ttcttattctctatgaataatctctccatctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactattaacacaagtaaaatcaat |
500 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||| ||| | ||||||| |
|
|
| T |
21788672 |
ttcttattctctatgactaaccactccatctcaatttgttaacaaaaaatatctctctgtctcagttatgcaactattaacaaaagaacaatcaat |
21788577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 107 - 500
Target Start/End: Original strand, 13501828 - 13502209
Alignment:
| Q |
107 |
tgttagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtaca |
206 |
Q |
| |
|
||||||||||||| |||||| | || ||||| ||| |||||| |||||||||| ||| |||| ||||||||||||||||| | | |||| ||| | | |
|
|
| T |
13501828 |
tgttagttgctgacaaaattacaagg-tactataaaatcaaaactaataaatgacatgattaaatgaaatataaaataaaataa-tcaactacatatgcc |
13501925 |
T |
|
| Q |
207 |
aacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataat |
306 |
Q |
| |
|
|| |||||||||||| |||| |||||||| |||||||||| | | ||||| |||||| | |||||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
13501926 |
aaaaaatattaattacatccgtaattttaacaactaaaccgatgagtcatgagtgaacagcaagtgaataatcttattgagacactgaaattaaaataaa |
13502025 |
T |
|
| Q |
307 |
gatatggagtgtt--gaataataaatagtcatatattttgcttttgcatattaaaagtcacaatattttaccttagtttatgagtctcatttctttctaa |
404 |
Q |
| |
|
|||| |||||||| ||||||||| | || ||||| ||||||| |||||||||| |||||||||||| ||||||| |||||| |||||||||||| |
|
|
| T |
13502026 |
gatagggagtgttaagaataataa------agattttttgtttttgcaaattaaaagtcgcaatattttacc-tagtttacgagtct-atttctttctaa |
13502117 |
T |
|
| Q |
405 |
ttcttattctctatgaataatctctccatctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactattaacacaagtaaaatcaat |
500 |
Q |
| |
|
|| ||||||||||||| || |||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||| ||| | ||||||| |
|
|
| T |
13502118 |
tttttattctctatgacta----ctccatctcaatttgttaacaaaaaatatctctctgtctcagttatgcaactattaacaaaagaacaatcaat |
13502209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 262 - 412
Target Start/End: Original strand, 15022696 - 15022847
Alignment:
| Q |
262 |
aaaaacaagtgaataatctaattgaggcactaaaattaaaataatgatatggagtgtt--gaataataaatagtcatatattttgcttttgcatattaaa |
359 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| || |||||| |||||||||||| |
|
|
| T |
15022696 |
aaaagcaagtgaataatctaattgagacactaaaattaaaataatgatatggagtgttaagaataataaagagtcagattttttgcatttgcatattaat |
15022795 |
T |
|
| Q |
360 |
agtcacaatattttaccttagtttatgagtctcatttctttctaattcttatt |
412 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
15022796 |
agtcacaatattttacc-cggtttatgagtctcttttctttctaattcttatt |
15022847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 173 - 413
Target Start/End: Original strand, 15005118 - 15005348
Alignment:
| Q |
173 |
aaatataaaataaaatcagttaactgcatgtacaaacaaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtg |
272 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| || ||||| || | |||||| |||||||||||||| | || ||| |||| |||||| |
|
|
| T |
15005118 |
aaatataaaataaaatcagtcaactacatgtaccaaaaaataatacgt----ccataagtttagcaactaaac-------tgatgagttaaaatcaagtg |
15005206 |
T |
|
| Q |
273 |
aataatctaattgaggcactaaaattaaaataatgatatggagtgtt--gaataataaatagtcatatattttgcttttgcatattaaaagtcacaatat |
370 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||| | |||| |||||||||| ||||| || |||| | || |||||||| | ||||||||| |
|
|
| T |
15005207 |
aataatctaattgagacgctaaaattaaaataatgatatgaaatgttaagaataataaagagtcagattttttacaattacatattaataatcacaatat |
15005306 |
T |
|
| Q |
371 |
tttaccttagtttatgagtctcatttctttctaattcttattc |
413 |
Q |
| |
|
|| | | ||||||||||||| |||||||||||||||||||| |
|
|
| T |
15005307 |
ttcaac-cggtttatgagtctcttttctttctaattcttattc |
15005348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 110 - 500
Target Start/End: Original strand, 20725791 - 20726182
Alignment:
| Q |
110 |
tagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaac |
209 |
Q |
| |
|
|||||||||| |||||| || || ||| |||| |||||| |||||||| | ||||||||| |||||||||||| |||||||| ||| |||||| |
|
|
| T |
20725791 |
tagttgctgacaaaattacagaggcactgcaaactcaaaactaataaataacgtgactaaatgaaatataaaatgaaatcagtcaacgacatgtaatttt |
20725890 |
T |
|
| Q |
210 |
aaatattaattatatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataatgat |
309 |
Q |
| |
|
| |||||| ||| |||||||||||||||||| | | | ||||| || ||||| ||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20725891 |
tttttctaattacatcaataattttagcaactaaatcgatgagtcatgagggaaaagcaaatgaataatctaattgaggcaataaaattaaaataatgat |
20725990 |
T |
|
| Q |
310 |
atggagtgtt---gaataataaatagtcatatattttgcttttgcatattaaaagtcacaatattttaccttagtttatgagtctcatttctttctaatt |
406 |
Q |
| |
|
|||||||||| |||||||||| ||| | || ||||||||||||||||||||||| |||||||||||| || || ||||||||| || || ||||||| |
|
|
| T |
20725991 |
atggagtgttaaagaataataaagagttagat-ttttgcttttgcatattaaaagttgcaatattttacc-taattgatgagtctctttactctctaatt |
20726088 |
T |
|
| Q |
407 |
cttattctctatgaataatctctccatctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactattaacacaagtaaaatcaat |
500 |
Q |
| |
|
|||||| | | ||| ||| ||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
20726089 |
cttattgtatgtgactaacctctctatctcaatttgtaaacaaaaaacatatctccatctcaattatgaaactattaacacaagaacaatcaat |
20726182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 394 - 500
Target Start/End: Original strand, 27991317 - 27991417
Alignment:
| Q |
394 |
tttctttctaattcttattctctatgaataatctctccatctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactattaacacaagtaa |
493 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| | |||||||||||||||||||||||||||| ||| |
|
|
| T |
27991317 |
tttctttctaattattattctctatgaataatctctc------aatttgtaaacaaaaaacatcttttcatctcaattatgcaactattaacacaaataa |
27991410 |
T |
|
| Q |
494 |
aatcaat |
500 |
Q |
| |
|
||||||| |
|
|
| T |
27991411 |
aatcaat |
27991417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 14873937 - 14873985
Alignment:
| Q |
122 |
aaattataggggtactacaaagtcaaaattaataaatgatgtgactaaa |
170 |
Q |
| |
|
|||||||||||| ||||||||||| ||| |||||||||| |||| |||| |
|
|
| T |
14873937 |
aaattataggggcactacaaagtcgaaactaataaatgacgtgagtaaa |
14873985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 135 - 500
Target Start/End: Original strand, 9021179 - 9021552
Alignment:
| Q |
135 |
actacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaatattaattatatccataatttt |
234 |
Q |
| |
|
||||||||||| ||| |||||||||| |||| |||| |||| |||||||||| |||| |||| ||||||| || |||||||||||| |||||||||||| |
|
|
| T |
9021179 |
actacaaagtctaaactaataaatgacgtgaataaataaaatgtaaaataaaaccagtcaactacatgtaccaaaaaatattaattacatccataatttt |
9021278 |
T |
|
| Q |
235 |
agcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataatgatatggagtgt--tgaataataaatag |
332 |
Q |
| |
|
| | ||||||| | | ||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||| || |
|
|
| T |
9021279 |
aagagctaaaccgatgagtcatgagtgaaaagcaagtgaataatctaattgaggcactacaattaaaataatgatatagagtgttatgagtaataaagag |
9021378 |
T |
|
| Q |
333 |
t-catatattttgcttttgcatattaaaagtcacaatattttaccttagtttatgagtctcatttct------ttctaattcttattctctatgaataat |
425 |
Q |
| |
|
| | ||||||| | |||||||||||| | ||||||||| |||| |||||| ||| ||||| |||||||||||||||||||||| |||| |
|
|
| T |
9021379 |
tagggtttttttgctaaagtatattaaaagtcgaattattttacc-tagtatatgagcctcttttctttctaattctaattcttattctctatgactaat |
9021477 |
T |
|
| Q |
426 |
ctctccatctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactattaacacaagtaaaatcaat |
500 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| ||||| |||||||||| |||||| | ||||||| |
|
|
| T |
9021478 |
atctccatctcaatttgaaaacaaaaaatatctctccatcttaattacgcaactattagcacaagaacaatcaat |
9021552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 136 - 373
Target Start/End: Complemental strand, 19443345 - 19443111
Alignment:
| Q |
136 |
ctacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaatattaattatatccataatttta |
235 |
Q |
| |
|
|||||||||||||| |||||| ||| |||| |||| |||||||||||||||||| | |||| ||||||| || |||||||||||| ||| ||||||||| |
|
|
| T |
19443345 |
ctacaaagtcaaaactaataattgacgtgattaaataaaatataaaataaaatcaatcaactacatgtaccaa-aaatattaattacatctataatttta |
19443247 |
T |
|
| Q |
236 |
gcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataatgatatggagtgt--tgaataataaatagt |
333 |
Q |
| |
|
||||||||| || | ||||| |||||||| | ||||| |||||||||| ||||||||||||||||||||||||| ||||| |||||||| || ||| |
|
|
| T |
19443246 |
acaactaaacatatgagtcatgagtgaaaagc---tgaatgatctaattgaagcactaaaattaaaataatgatatgaagtgttatgaataat-aagagt |
19443151 |
T |
|
| Q |
334 |
catatattttgcttttgcatattaaaagtcacaatatttt |
373 |
Q |
| |
|
|| || |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
19443150 |
cagattttttgcttttgcatattaaaagccacgatatttt |
19443111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 297 - 490
Target Start/End: Complemental strand, 15152049 - 15151848
Alignment:
| Q |
297 |
ttaaaataatgatatggagtgtt--gaataataaatagtcatatattttgcttttgcatattaa-------aagtcacaatattttaccttagtttatga |
387 |
Q |
| |
|
|||||||||||||| ||| |||| |||||||||| ||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
15152049 |
ttaaaataatgatagggaatgttatgaataataaagagtcagattttttgcttttgcatattaacactcaaaagtcacaatattttacct-agtttatga |
15151951 |
T |
|
| Q |
388 |
gtctcatttctttctaattcttattctctatgaataatctctccatctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactattaacac |
487 |
Q |
| |
|
||||| ||||||| ||||||| ||||||| || |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
15151950 |
gtctcgtttctttataattctcattctctttgtctaatctctccatctcaatttgtaaacaaaaatcatctctccatcacaattctgcaactattaacac |
15151851 |
T |
|
| Q |
488 |
aag |
490 |
Q |
| |
|
||| |
|
|
| T |
15151850 |
aag |
15151848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 136 - 373
Target Start/End: Complemental strand, 19579498 - 19579262
Alignment:
| Q |
136 |
ctacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaata-ttaattatatccataatttt |
234 |
Q |
| |
|
|||||||||||||| |||||| ||| |||| |||| |||||||||||||||||| | |||| ||||||| | ||||| ||||||| ||| |||||||| |
|
|
| T |
19579498 |
ctacaaagtcaaaactaataattgacgtgattaaataaaatataaaataaaatcaatcaactacatgtaccacaaaatacttaattacatctataatttt |
19579399 |
T |
|
| Q |
235 |
agcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaataatgatatggagtgt--tgaataataaatag |
332 |
Q |
| |
|
| ||||||||| || | ||||| |||||||| | ||||| |||||||||| ||||||||||||||||||||||||| ||||| |||||||| || || |
|
|
| T |
19579398 |
aacaactaaacatatgagtcatgagtgaaaagc---tgaatgatctaattgaagcactaaaattaaaataatgatatgaagtgttatgaataat-aagag |
19579303 |
T |
|
| Q |
333 |
tcatatattttgcttttgcatattaaaagtcacaatatttt |
373 |
Q |
| |
|
||| || |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
19579302 |
tcagattttttgcttttgcatattaaaagccacgatatttt |
19579262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 351 - 490
Target Start/End: Complemental strand, 19437159 - 19437021
Alignment:
| Q |
351 |
catattaaaagtcacaatattttaccttagtttatgagtctcatttctttctaattcttattctctatgaataatctctccatctcaatttgtaaacaaa |
450 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||||| || ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||| |
|
|
| T |
19437159 |
catattaaaagtcgcaatattttttct-agtttatgagtttcttttctttctaattcttattctctatgactaacctctctatctcaatttgtaaagaaa |
19437061 |
T |
|
| Q |
451 |
accaatctctccatctcaattatgcaactattaacacaag |
490 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19437060 |
aaacatctctccatctcaattatgcaactattaacacaag |
19437021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 351 - 490
Target Start/End: Complemental strand, 19573308 - 19573170
Alignment:
| Q |
351 |
catattaaaagtcacaatattttaccttagtttatgagtctcatttctttctaattcttattctctatgaataatctctccatctcaatttgtaaacaaa |
450 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||||| || ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||| |
|
|
| T |
19573308 |
catattaaaagtcgcaatattttttct-agtttatgagtttcttttctttctaattcttattctctatgactaacctctctatctcaatttgtaaagaaa |
19573210 |
T |
|
| Q |
451 |
accaatctctccatctcaattatgcaactattaacacaag |
490 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19573209 |
aaacatctctccatctcaattatgcaactattaacacaag |
19573170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 122 - 304
Target Start/End: Complemental strand, 15152528 - 15152348
Alignment:
| Q |
122 |
aaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgta-caaacaaatattaatt |
220 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||||||||| ||||||||| ||||||||||||||||||| | |||| |||||| |||| ||| |||||| |
|
|
| T |
15152528 |
aaattataggggcactacaaagttaaaactaataaatgacgtgactaaatgaaatataaaataaaatcaatcaactacatgtaccaaaaaaagattaatc |
15152429 |
T |
|
| Q |
221 |
atatccataattttagcaactaaacctacgcgtcataagtgaaaaacaagtgaataatctaattgaggcactaaaattaaaata |
304 |
Q |
| |
|
| ||||||||||||||||||||||| | | ||||| | || | ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15152428 |
acatccataattttagcaactaaacggatgagtcatgaatg---agcaagtgaataatctaattggagcactaaaattaaaata |
15152348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 394 - 490
Target Start/End: Complemental strand, 19442815 - 19442719
Alignment:
| Q |
394 |
tttctttctaattcttattctctatgaataatctctccatctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactattaacacaag |
490 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19442815 |
tttctttctaattcttattttctatgactaatctatccatctcaaattgtaaacaaaaaacatctctccatctcaattatgcaactattaacacaag |
19442719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 394 - 490
Target Start/End: Complemental strand, 19578966 - 19578870
Alignment:
| Q |
394 |
tttctttctaattcttattctctatgaataatctctccatctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactattaacacaag |
490 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19578966 |
tttctttctaattcttattttctatgactaatctatccatctcaaattgtaaacaaaaaacatctctccatctcaattatgcaactattaacacaag |
19578870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 19437292 - 19437242
Alignment:
| Q |
110 |
tagttgctgattaaattataggggtactacaaagtcaaaattaataaatga |
160 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
19437292 |
tagttgctgacaaaattacaggggcactacaaagtcaaaaataataaatga |
19437242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 19573441 - 19573391
Alignment:
| Q |
110 |
tagttgctgattaaattataggggtactacaaagtcaaaattaataaatga |
160 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
19573441 |
tagttgctgacaaaattacaggggcactacaaagtcaaaaataataaatga |
19573391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 244
Target Start/End: Original strand, 4633112 - 4633246
Alignment:
| Q |
110 |
tagttgctgattaaattataggggtactacaaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaac |
209 |
Q |
| |
|
|||||||| || ||||||||||| |||| || |||||| ||| |||||| |||| |||| |||||||| ||||||||||||| | | ||||||| || |
|
|
| T |
4633112 |
tagttgctaatggaattataggggcactaggaactcaaaactaacaaatgacgtgattaaatgaaatatagaataaaatcagttcattacatgtaccaaa |
4633211 |
T |
|
| Q |
210 |
aaatattaattatatccataattttagcaactaaa |
244 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| |
|
|
| T |
4633212 |
aaatattaattacattcataattttagcaactaaa |
4633246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 397 - 490
Target Start/End: Complemental strand, 22763959 - 22763866
Alignment:
| Q |
397 |
ctttctaattcttattctctatgaataatctctccatctcaatttgtaaacaaaaccaatctctccatctcaattatgcaactattaacacaag |
490 |
Q |
| |
|
|||||||||||| || ||||||| |||||||||||| |||| |||||||||||| |||||| |||||||||| |||||||||||||||||| |
|
|
| T |
22763959 |
ctttctaattctcatcctctatgtctaatctctccatttcaacttgtaaacaaaaaacatctcttcatctcaattctgcaactattaacacaag |
22763866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 29676790 - 29676873
Alignment:
| Q |
140 |
aaagtcaaaattaataaatgatgtgactaaacgaaatataaaataaaatcagttaactgcatgtacaaacaaatattaattata |
223 |
Q |
| |
|
|||||||||| |||||||||| ||| |||| ||||||||||||||||||| |||||| ||||||| || ||||||| |||||| |
|
|
| T |
29676790 |
aaagtcaaaactaataaatgacatgattaaatgaaatataaaataaaatcacttaactacatgtaccaaaaaatattgattata |
29676873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 451
Target Start/End: Original strand, 4633249 - 4633447
Alignment:
| Q |
267 |
caagtgaataatctaattgaggcactaaaattaaaataatgatatggagtgt--tgaataataaatagtcata-tattttgcttttgcatatta------ |
357 |
Q |
| |
|
||| |||||| || |||||||| ||||||||| ||||||||||||||| ||| | ||||||||| ||| | | | |||||| ||| ||||||| |
|
|
| T |
4633249 |
caaatgaatagtcaaattgaggaactaaaatttaaataatgatatggaatgttatcaataataaagagttagatttttttgccttttcatattaacactc |
4633348 |
T |
|
| Q |
358 |
-aaagtcacaatattttaccttagtttatgagtctcatttctttctaattcttattctctatg---aa--taatctctccatctcaatttgtaaacaaaa |
451 |
Q |
| |
|
|||||||||||| |||| | |||||||||||||| |||||||||| ||| || |||| || || |||||||||||||||||||| ||||||||| |
|
|
| T |
4633349 |
taaagtcacaataatttatc-tagtttatgagtctatattctttctaactctcatcctctgtgtttaatttaatctctccatctcaatttttaaacaaaa |
4633447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University