View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17723_low_9 (Length: 483)

Name: NF17723_low_9
Description: NF17723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17723_low_9
NF17723_low_9
[»] chr1 (1 HSPs)
chr1 (12-483)||(51699798-51700269)


Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 12 - 483
Target Start/End: Complemental strand, 51700269 - 51699798
Alignment:
Q  12 aagaatagtagggtacctttatttgaggaatgagcgcaggtcccccataagcaaatgctgtatagagttgaacaagagttgctccagctcgtactttctg 111  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51700269 aagaatagtagggtacctttatttgaggaatgagtgcaggtcccccataagcaaatgctgtatagagttgaacaagagttgctccagctcgtactttctg 51700170  T
Q  112 gtatgcatcctccccactgaatttttacacaaggctcggaattattgcatattttatttgcagttttagatgataagaggaatactaatatacaacaatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  51700169 gtatgcatcctccccactgaatttttacacaaggctcggaattattgcatattttatttgcagttttagatgataagaggaatactaatatacaacagtg 51700070  T
Q  212 aataagtgaaggaaaacgtagtttttacctgctaatgcccccacagccaatcaaaggaatcctaccctgatatacatgaattgacagagtcgtgttgtta 311  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51700069 aataagtgaaggaaaacataatttttacctgctaatgcccccacagccaatcaaaggaatcctaccctgatatacatgaattgacagagtcgtgttgtta 51699970  T
Q  312 ggcatgaataacatgtataagcaaatcaagacaaagaaaaacattatgtgctggaatgtgcatacaaaatctgtaattaaaaatgctgaaaatagtgtac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51699969 ggcatgaataacatgtataagcaaatcaagacaaagaaaaacattatgtgctggaatgtgcatacaaaatctgtaattaaaaatgctgaaaatagtgtac 51699870  T
Q  412 agtgaaaggactccactaaaagacactatcaggtgctgagtattttactctaatggaaattacaaatcagtg 483  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51699869 agtgaaaggactccactaaaaaacactatcaggtgctgagtattttactctaatggaaattacaaatcagtg 51699798  T

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