View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17724_high_1 (Length: 663)

Name: NF17724_high_1
Description: NF17724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17724_high_1
NF17724_high_1
[»] chr5 (6 HSPs)
chr5 (16-663)||(21035663-21036330)
chr5 (39-100)||(10101094-10101155)
chr5 (39-96)||(9678700-9678757)
chr5 (39-100)||(10214391-10214452)
chr5 (39-101)||(10104896-10104958)
chr5 (39-100)||(20982839-20982899)
[»] chr6 (3 HSPs)
chr6 (205-663)||(26384653-26385136)
chr6 (42-168)||(26384421-26384549)
chr6 (39-90)||(22366692-22366743)
[»] chr7 (6 HSPs)
chr7 (39-100)||(33032735-33032796)
chr7 (39-100)||(33120295-33120356)
chr7 (39-100)||(34906312-34906373)
chr7 (39-100)||(34913952-34914013)
chr7 (38-100)||(1470658-1470720)
chr7 (39-87)||(35702429-35702477)
[»] chr4 (1 HSPs)
chr4 (39-100)||(41108172-41108233)
[»] chr3 (1 HSPs)
chr3 (39-99)||(5130615-5130675)
[»] chr8 (1 HSPs)
chr8 (39-99)||(1086910-1086970)


Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 663
Target Start/End: Complemental strand, 21036330 - 21035663
Alignment:
Q  16 ttaacaaccttaattatcaaaga--acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag-agacagaaacnn 112  Q
    |||||||||||||||||||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||      
T  21036330 ttaacaaccttaattatcaaagataacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggaaacagaaacaa 21036231  T
Q  113 nnnnnnntattatcaaagaaaccaaaaagaaactatatttcttattgatcaagttttaaatgaaggtannnnnnnnnnnnnnnnnnnnnnnnctgttgat 212  Q
           |||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||                        ||||||||    
T  21036230 aaaacaatattatcaaagaaaccaaaaagaagctatttttgttattgatcaagttttaaatgaaggtatttttgtttttaggatacttttttctgttgat 21036131  T
Q  213 caagtttgaatctttggttgagaatattaatggattttgcaagcgggtatgttcatgtatttatatatagaaatagtctatagtatgtatatata--gag 310  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  21036130 caagtttgaatctttggttgaaaatattaatggattttgcaagtgggtatgttcatgtatttatatatagaaatagtctatagtatgtatatatatagag 21036031  T
Q  311 acnnnnnnnnncacaaaagaaacacgtaaaataatata----------------gtttatgaggtttttgttactattgacttgtagggtcaatattgtt 394  Q
    ||         |||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||| |||||    
T  21036030 acaaaaaaaa-cacaaaagaaacacgtaaaataatatattttaacgtgtcatgtgtttatgaggtttttgttactattgacttgtagggtcaatgttgtt 21035932  T
Q  395 ttcacacaaagagagtttcaacttcaaaaggttggaccctataaggaattattctaatgataaacattcaaaattgaaaagagagaatgatgtttgtata 494  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  21035931 ttcatacaaagagagtttcaacttcaaaaggttggaccctataaggaattattctaatgagaaacattcaaaattgaagagagagaatgatgtttgtata 21035832  T
Q  495 gttttgtataaaagaggagttatgatttgaatattgaccattgaagatttttgaggaaaattgagaacacctctagcagtcaaagggaggaattggtaaa 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21035831 gttttgtataaaagaggagttatgatttgaatattgaccattgaagatttttgaggaaaattgagaacacctctagcagtcaaagggaggaattggtaaa 21035732  T
Q  595 ccatcaaatggcttaaggtaattgtaatggacgtttgggattttgatgaggtatatgcaacacatctcc 663  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21035731 ccatcaaatggcttaaggtaattgtaatggacgtttgggattttgatgaggtatatgcaacacatctcc 21035663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 10101155 - 10101094
Alignment:
Q  39 acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag 100  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  10101155 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag 10101094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 9678700 - 9678757
Alignment:
Q  39 acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttc 96  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  9678700 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttc 9678757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 10214391 - 10214452
Alignment:
Q  39 acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag 100  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||    
T  10214391 acgaccttacttgaacaggatctgttctataggattgtactactgtgtccttgatttctaag 10214452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 10104958 - 10104896
Alignment:
Q  39 acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaaga 101  Q
    ||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||||||||||    
T  10104958 acgaccttacttgaacaggatctgttctataggattatactactgtgtccttgatttctaaga 10104896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 20982899 - 20982839
Alignment:
Q  39 acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag 100  Q
    ||||||||||| ||| |||||||| ||||||||||||||||| ||| |||||||||||||||    
T  20982899 acgaccttact-gaacaggatctgatctataggatcgtactattgtatccttgatttctaag 20982839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 205 - 663
Target Start/End: Original strand, 26384653 - 26385136
Alignment:
Q  205 ctgttgatcaagtttgaatctttggttgagaatattaatggattttgcaagcgggtatgttcatgtatttatatatagaaatagtctatagtatgtatat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26384653 ctgttgatcaagtttgaatctttggttgagaatattaatggattttgcaagtgggtatgttcatgtatttatatatagaaatagtctatagtatgtatat 26384752  T
Q  305 ataga--gacnnnnnnnnn-cacaaaagaaacacgtaaaataatata----------------gtttatgaggtttttgttactattgacttgtagggtc 385  Q
    ||| |  |||          |||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||    
T  26384753 atataaagacaaaaaaaaaacacaaaagaaacacgtaaaataatatattttaatgtgtcatgtgtttatgaggtttttgttactattgacttgtagggtc 26384852  T
Q  386 aata--------ttgttttcacacaaagagagtttcaacttcaaaaggttggaccctataaggaattattctaatgataaacattcaaaattgaaaagag 477  Q
    ||||        ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  26384853 aataactcaatattgttttcatacaaagagagtttcaacttcaaa-ggttggaccctataaggaattattctaatgagaaacattcaaaattgaagagag 26384951  T
Q  478 agaatgatgtttgtatagttttgtataaaagaggagttatgatttgaatattgaccattgaagatttttgaggaaaattgagaacacctctagcagtcaa 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26384952 agaatgatgtttgtatagttttgtataaaagaggagttatgatttgaatattgaccattgaagatttttgaggaaaattgagaacacctctagcagtcaa 26385051  T
Q  578 agggaggaattggtaaaccatcaaatggcttaaggtaattgtaatggacgtttgggattttgatgaggtatatgcaacacatctcc 663  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26385052 agggaggaattggtaaa-catcagatggcttaaggtaattgtaatggacgtttgggattttgatgaggtatattcaacacatctcc 26385136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 26384421 - 26384549
Alignment:
Q  42 accttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaa-gagacagaaac-nnnnnnnnntattatcaaagaaaccaaaa 139  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||          ||||||||||||||||||||    
T  26384421 accttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacagaaacaaaaaaaatatattatcaaagaaaccaaaa 26384520  T
Q  140 agaaactatatttcttattgatcaagttt 168  Q
    |||| |||||||| |||||||||||||||    
T  26384521 agaagctatatttgttattgatcaagttt 26384549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 22366692 - 22366743
Alignment:
Q  39 acgaccttacttgaagaggatctgctctataggatcgtactactgtgtcctt 90  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||||||||    
T  22366692 acgaccttatttgaacaggatctgttctataggatcgtactactgtgtcctt 22366743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 33032796 - 33032735
Alignment:
Q  39 acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag 100  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  33032796 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag 33032735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 33120356 - 33120295
Alignment:
Q  39 acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag 100  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  33120356 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag 33120295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 34906312 - 34906373
Alignment:
Q  39 acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag 100  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  34906312 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag 34906373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 34914013 - 34913952
Alignment:
Q  39 acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag 100  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  34914013 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag 34913952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 1470720 - 1470658
Alignment:
Q  38 aacgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag 100  Q
    |||||||||||||||| | |||||  |||||||||||||||||||||||||||||||||||||    
T  1470720 aacgaccttacttgaacatgatctattctataggatcgtactactgtgtccttgatttctaag 1470658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 35702429 - 35702477
Alignment:
Q  39 acgaccttacttgaagaggatctgctctataggatcgtactactgtgtc 87  Q
    ||||||||||||||| |||||||| |||||||||| |||||||||||||    
T  35702429 acgaccttacttgaacaggatctgttctataggatggtactactgtgtc 35702477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 41108233 - 41108172
Alignment:
Q  39 acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaag 100  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  41108233 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag 41108172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 5130615 - 5130675
Alignment:
Q  39 acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaa 99  Q
    ||||||||||||||| | |||||  | |||||||||||| |||||||||||||||||||||    
T  5130615 acgaccttacttgaacaagatctcttttataggatcgtattactgtgtccttgatttctaa 5130675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 1086970 - 1086910
Alignment:
Q  39 acgaccttacttgaagaggatctgctctataggatcgtactactgtgtccttgatttctaa 99  Q
    ||||||||||||||| | |||||  | |||| |||||||||| ||||||||||||||||||    
T  1086970 acgaccttacttgaacaagatctattttataagatcgtactattgtgtccttgatttctaa 1086910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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