View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17724_high_4 (Length: 277)
Name: NF17724_high_4
Description: NF17724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17724_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 49388170 - 49388426
Alignment:
| Q |
16 |
aaatcatcttcgaattccaagaaataagaacttcttcgtgatttgcagttttcaatgtaaagatcggttttcttcgtgagttcagcaaaataagagcttc |
115 |
Q |
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| T |
49388170 |
aaatcatctttgaattccaagaaataagaacttcttcatgatttgcagttttcaacgtaaagatcgattttcttcgtgagttcagcaaaataagagcttc |
49388269 |
T |
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| Q |
116 |
caatagttgcagcccaggctttgcatacaagccagagttatacagaaaattaagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagc |
215 |
Q |
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| T |
49388270 |
caatagttgcagcccaagctttgcatacaagtcagagttatacaggaaattaagaggaaccaaaataaagatacaaagcaacaagtcttcagggagaagc |
49388369 |
T |
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| Q |
216 |
agctttgaaatcactttataactcttagtactatttgagttttggttcatattcttc |
272 |
Q |
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| T |
49388370 |
agctttgaaatcactttataactctcagtactatttgagttttggttcatattcttc |
49388426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 2327146 - 2327255
Alignment:
| Q |
163 |
aattaagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataactcttagtactatttgagttttggtt |
262 |
Q |
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| T |
2327146 |
aattaagaggaacaaaagtaaagatatgaaacctcaagtcttcaagtagaagcaactttgaaatcattttacaactcttagtactatttgagttttggtt |
2327245 |
T |
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| Q |
263 |
catattcttc |
272 |
Q |
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| | |||||| |
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| T |
2327246 |
cttgttcttc |
2327255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 164 - 272
Target Start/End: Complemental strand, 39571633 - 39571528
Alignment:
| Q |
164 |
attaagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataactcttagtactatttgagttttggttc |
263 |
Q |
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|||||||||||||||| |||||||| || ||| || |||| |||||| |||| |||||||||||||||| |||||| |||||||||||||||| || |
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| T |
39571633 |
attaagaggaaccaaactaaagatatcaaacaataaatcttcagggagcagcaactttgaaatcactttacaactct---tactatttgagttttgattt |
39571537 |
T |
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| Q |
264 |
atattcttc |
272 |
Q |
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||||||||| |
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| T |
39571536 |
atattcttc |
39571528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 39575640 - 39575534
Alignment:
| Q |
163 |
aattaagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataactcttagtactatttgagttttggtt |
262 |
Q |
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||||||||||||||||| | |||||| || ||||| ||||| |||||| |||| |||| |||| ||||| |||||| |||||||||||||||| || |
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| T |
39575640 |
aattaagaggaaccaaactgaagatatcaaacaacaggtcttcagggagcagcacttttggaatctctttacaactct---tactatttgagttttgatt |
39575544 |
T |
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| Q |
263 |
catattcttc |
272 |
Q |
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||||||||| |
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| T |
39575543 |
tatattcttc |
39575534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 9902227 - 9902141
Alignment:
| Q |
158 |
cagaaaattaagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataactcttagt |
244 |
Q |
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|||| ||| ||||||||||||||||| |||| ||| || |||||||| ||| || | || ||||||||| |||| | |||||||||| |
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| T |
9902227 |
cagacaatcaagaggaaccaaagtaaggatataaaacatcaagtcttcaggaagcaacacctttgaaattacttcacaactcttagt |
9902141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 9841266 - 9841190
Alignment:
| Q |
166 |
taagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataactctta |
242 |
Q |
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|||||||||||||||||| || | || ||||||||||| | | || | || |||||||||||||||| |||||||| |
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| T |
9841266 |
taagaggaaccaaagtaaggacatgaaacaacaagtcttcaagaagcaacaactttgaaatcactttacaactctta |
9841190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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