View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17724_high_5 (Length: 273)
Name: NF17724_high_5
Description: NF17724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17724_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 23971857 - 23972081
Alignment:
| Q |
13 |
aatatatattacatttgcattcaatcaaatgagagttgacccaatttcaatgaaacctcaaatgtttggagnnnnnnnntgttgggtgacacatatatga |
112 |
Q |
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| T |
23971857 |
aatatatattacatttgcattcaatcaaatgagagtcgacccaatttcaatgaaa----------ttggagaaaaaaaatgttgggtgacacatat---- |
23971942 |
T |
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| Q |
113 |
tatatttcacaagatattaatgagtaacctaagagagtggcactatgctctcagtatattgaatgtttgtgctaaaaacattacattacacggtcggtgc |
212 |
Q |
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| T |
23971943 |
---atttcacaagatattaatgagtaacctaagagagtggcactatgctctcattatattggatgtttgtgctaaaaacattacattacactgtcggtgc |
23972039 |
T |
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| Q |
213 |
ataaaaatgaatatcttaaatttatatattttggaagttgac |
254 |
Q |
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| T |
23972040 |
ataaaaatgaatatcttaaatttatatattttggaagttgac |
23972081 |
T |
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