View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17724_low_2 (Length: 464)
Name: NF17724_low_2
Description: NF17724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17724_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 46704280 - 46704722
Alignment:
| Q |
16 |
cttttcactatgccaaggcacatggaagagagagggtgtctgcgatacacaaagccaacattatgcaaaagactgacggtcttttcctgaaggtctgcta |
115 |
Q |
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| T |
46704280 |
cttttcactatgccaaggcacatggaagagagagggtgtctgcgatacacaaagccaacattatgcaaaagacggacggtcttttcctgaaggtccgcta |
46704379 |
T |
|
| Q |
116 |
acacattcaaatgcctataaatactctgtcacaatttttattcttgaatactaataacaatgactgtttattttgaattatttttagtgttgccgtgagg |
215 |
Q |
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| T |
46704380 |
acacattcaaatgcctataaatactctgtcacaatttttattcttgaatactaataacaatgactgtttattttgaattatttttagtgttgccgtgagg |
46704479 |
T |
|
| Q |
216 |
ttgctaacaaatatccagagatagtatatgaggaagttgtcattgacaattgctgcatgatggtaatcttagttaacttgatgagttgatgtaggataca |
315 |
Q |
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| T |
46704480 |
ttgctaacaaatatccagagatagtatatgaggaagttgtcattgacaattgctgcatgatggtaatcttagttaacttgatgagttgatgtaggataca |
46704579 |
T |
|
| Q |
316 |
actgcatttttaaattttattttatctctgaaaatgatacactggttaannnnnnnaccatccacagcttgtgaagaatcctgcactttttgatgtattg |
415 |
Q |
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| T |
46704580 |
gctgcatttttaaattttattttatctctgaaaatgatacactggttaatttttttaccatccacagcttgtgaagaatcctgcactttttgatgtattg |
46704679 |
T |
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| Q |
416 |
gtgatgcctaacctttatggtgatataatcagcgtcctctgtg |
458 |
Q |
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| T |
46704680 |
gtgatgcctaacctttatggtgatataatcagcgacctttgtg |
46704722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 458
Target Start/End: Complemental strand, 28177453 - 28177023
Alignment:
| Q |
16 |
cttttcactatgccaaggcacatggaagagagagggtgtctgcgatacacaaagccaacattatgcaaaagactgacggtcttttcctgaaggtctgcta |
115 |
Q |
| |
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|||||||||| ||||||| |||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||| | |
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| T |
28177453 |
cttttcactacgccaaggaacatggaagaaagagagtgtctgctatacacaaagctaacattatgcaaaagactgatggtcttttcctcaaggtcttttg |
28177354 |
T |
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| Q |
116 |
acacattcaaatgcctataaatactctgtcacaatttttattct-tgaatactaataacaatgactgtttattttgaattatttttagtgttgccgtgag |
214 |
Q |
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| | | ||||||||||| |||| ||| |||||||| |||| |||||||||||| ||||||||||| || ||||||||||||||||||||||| |
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| T |
28177353 |
atatgtgcaaatgcctatcaataaa--gtctcaattttttttctgtgaatactaatat---tgactgtttatgttttattatttttagtgttgccgtgag |
28177259 |
T |
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| Q |
215 |
gttgctaacaaatatccagagatagtatatgaggaagttgtcattgacaattgctgcatgatggtaatcttagttaacttgatgagttgatgtaggatac |
314 |
Q |
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| T |
28177258 |
gttgcagagaaatatcccgagatagtgtacgaggaagttgtcattgacaattgctgcatgatggtaatattggtgaactggata--------taggatac |
28177167 |
T |
|
| Q |
315 |
aactgcatttttaaattttattttatctctgaaaatgatacactggttaannnnnnnaccatccacagcttgtgaagaatcctgcactttttgatgtatt |
414 |
Q |
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||||||||||| | | || |||| ||| ||| | ||||||||||||||| ||| ||||||||||||||||||||||| ||| ||||||||||| |
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| T |
28177166 |
aactgcattttgacttctttttttgtctatgagattgatacactggttaatttttggaccttccacagcttgtgaagaatcctggactctttgatgtatt |
28177067 |
T |
|
| Q |
415 |
ggtgatgcctaacctttatggtgatataatcagcgtcctctgtg |
458 |
Q |
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|||||||||||||||||| |||||||||||||||| ||| |||| |
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| T |
28177066 |
ggtgatgcctaacctttacggtgatataatcagcgacctgtgtg |
28177023 |
T |
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