View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17724_low_3 (Length: 345)
Name: NF17724_low_3
Description: NF17724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17724_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 4 - 324
Target Start/End: Complemental strand, 14093822 - 14093512
Alignment:
| Q |
4 |
atgtcgaagaaaattggtggctgtgtggaaacatatacgtggccgtcaagtataccaattagtgaccaaagcaaacatttgctcttagtcttctcatata |
103 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14093822 |
atgtcaaataaaattggtggctgtgtggaaacatatacgtggccgtcaagtataccaattagtgaccaaagcaaacatttgctcttagtcttctcatat- |
14093724 |
T |
|
| Q |
104 |
tatgattcactgaattcatgaaaatgaaaactacaccaaatggaatgtgacagcctccaatatggagccataataaaactcaataataataaatcattgt |
203 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14093723 |
---gattcactgaattcatgaaaa------ctacaccaaatggaatgtgacagcctccaatatggagccataataaaactcaataataataaatcattgt |
14093633 |
T |
|
| Q |
204 |
cgtcttatttaatatatgaggctaaggtagtactttactatcaaaatctagggacttcaaatcatagaaaaccattcatattttgcttacataattcaca |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14093632 |
cgtcttatttaatatatgaggctaaggtagtactttactatcaaaatctagggacttcaaatcatagaaaaccattcatattttgcttacatgattcaca |
14093533 |
T |
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| Q |
304 |
atatctttgtttgactaggta |
324 |
Q |
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||||||||||||||||||||| |
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| T |
14093532 |
atatctttgtttgactaggta |
14093512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 39524861 - 39524968
Alignment:
| Q |
191 |
aataaatcattgtcgtcttatttaatatatgaggctaaggtagtactttactatcaaaatctagggacttcaaatcatagaaaaccattcatattttgct |
290 |
Q |
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| T |
39524861 |
aataaattattgtcgtcttatttatactttgaggctaaggtagtactttaccaccaaaatctagggacttcaaatcatagataaccattcatattttact |
39524960 |
T |
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| Q |
291 |
tacataat |
298 |
Q |
| |
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|||||||| |
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| T |
39524961 |
tacataat |
39524968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 190
Target Start/End: Original strand, 39524482 - 39524603
Alignment:
| Q |
59 |
caattagtgaccaaagcaaacatttgctcttagtcttctcatatatatgattcactgaattcatgaaaatgaaaactacaccaaatggaatgtgacagcc |
158 |
Q |
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|||||||||||||||||||| ||||| ||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
39524482 |
caattagtgaccaaagcaaatatttgttcttaatcttcccatat----gattcactgaattcatga------aaactacaccaaatggaatttgacagcc |
39524571 |
T |
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| Q |
159 |
tccaatatggagccataataaaactcaataat |
190 |
Q |
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||||||||||| |||| | ||||||||||||| |
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| T |
39524572 |
tccaatatggaaccatcacaaaactcaataat |
39524603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 19405585 - 19405728
Alignment:
| Q |
13 |
aaaattggtggctgtgtggaaacatatacgtggccgtcaagtataccaattagtgaccaaagcaaaca-tttgctcttagtcttctcatatatatgattc |
111 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| |||||| ||| ||||||||||| | ||||||||| |
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| T |
19405585 |
aaaattggtggctgtacggaaacatatacgtggccgtcaagcataccaattagtgacaaaatcaaacatttttttcttagtcttccc----atatgattc |
19405680 |
T |
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| Q |
112 |
actgaattcatgaaaatgaaaactacaccaaatggaatgtgacagcctccaata |
165 |
Q |
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| T |
19405681 |
attgaattc------atgaaaactacaccaaatggaatgggacagcctccaata |
19405728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 31532993 - 31532876
Alignment:
| Q |
13 |
aaaattggtggctgtgtggaaacatata--cgtggccgtcaagtataccaattagtgaccaaagcaaacatttgctcttagtcttctcatatat-atgat |
109 |
Q |
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||||||||||| ||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| | |||| ||||| |
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| T |
31532993 |
aaaattggtggttgtatggaaacatatatacgtggccgtcaagtataccaataagtgaccaaagcaaacattttttcttagtctatacccatatgatgat |
31532894 |
T |
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| Q |
110 |
tcactgaattcatgaaaa |
127 |
Q |
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|||||||||||||||||| |
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| T |
31532893 |
tcactgaattcatgaaaa |
31532876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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