View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17724_low_4 (Length: 326)
Name: NF17724_low_4
Description: NF17724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17724_low_4 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 12850 - 13137
Alignment:
| Q |
16 |
attgtctagtttcaacatcactattgtgaatacgattaagattttgttttgaaaaatggacnnnnnnn--ggggaaaattggtttattttaattcgttga |
113 |
Q |
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| T |
12850 |
attgtctagtttgaacatcactattgtgaatacgattaagattttgttttgaaaaatggactttttttttggggaaaattggtttattttaattcgttga |
12949 |
T |
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| Q |
114 |
gagagagactaagtcatgttagatattgttcgttgaattgtttagttaactataatctattattacaatccta-tgattatttgatttaaatacatttga |
212 |
Q |
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| T |
12950 |
gagagagaccaagtcatgtcagatattattcgttgaattgtttagttaactataatctattattacaatcctattgattattcgatttaaatacatttga |
13049 |
T |
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| Q |
213 |
tcataattcataatagttaggccaatgcattggtcaataaatttcttcaacgattactacccttcaatgtctcggtgaagcccaccacaaccctc |
307 |
Q |
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| T |
13050 |
-------tcataataattaggccaatgcattggtcgataaatttcttcaaggattaccacccttcaatgtctcggtgaagcccaccacaaccctc |
13137 |
T |
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Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 16424138 - 16424425
Alignment:
| Q |
16 |
attgtctagtttcaacatcactattgtgaatacgattaagattttgttttgaaaaatggacnnnnnnn--ggggaaaattggtttattttaattcgttga |
113 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16424138 |
attgtctagtttgaacatcactattgtgaatacgattaagattttgttttgaaaaatggactttttttttggggaaaattggtttattttaattcgttga |
16424237 |
T |
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| Q |
114 |
gagagagactaagtcatgttagatattgttcgttgaattgtttagttaactataatctattattacaatccta-tgattatttgatttaaatacatttga |
212 |
Q |
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||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
16424238 |
gagagagaccaagtcatgtcagatattattcgttgaattgtttagttaactataatctattattacaatcctattgattattcgatttaaatacatttga |
16424337 |
T |
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| Q |
213 |
tcataattcataatagttaggccaatgcattggtcaataaatttcttcaacgattactacccttcaatgtctcggtgaagcccaccacaaccctc |
307 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16424338 |
-------tcataataattaggccaatgcattggtcgataaatttcttcaaggattaccacccttcaatgtctcggtgaagcccaccacaaccctc |
16424425 |
T |
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