View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17724_low_8 (Length: 258)
Name: NF17724_low_8
Description: NF17724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17724_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 34730737 - 34730624
Alignment:
| Q |
129 |
tttctaaatcagcaaaaatggaacctagcttaagttagacagcactctggaaaatccaattagaagaaaatgaaagttttggaatattcgaatgagtaga |
228 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34730737 |
tttctaaatcagcaaaaatggaacctcgcttaagttagacagcactctggaaaatccaattagaagaaaatgaaagttttggaatattcgaatgagtaga |
34730638 |
T |
|
| Q |
229 |
actagaaataatgt |
242 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
34730637 |
actagaagtaatgt |
34730624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 34730921 - 34730818
Alignment:
| Q |
7 |
atttgtttttattcttgggtcacaaatattgattttgaatgaattgattctttaaaattaattatccttcaatttgtattaaatttaaagtgttttatgt |
106 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34730921 |
atttgtttttattcttcggtcataaatattgattttgaatgaattgattatttaaaattaattatccttcaatttgtattaaatttaaagtgttttatgt |
34730822 |
T |
|
| Q |
107 |
ttga |
110 |
Q |
| |
|
|||| |
|
|
| T |
34730821 |
ttga |
34730818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 9952546 - 9952584
Alignment:
| Q |
17 |
attcttgggtcacaaatattgattttgaatgaattgatt |
55 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
9952546 |
attcttgggtgacaaaaattgattttgaatgaattgatt |
9952584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 38129421 - 38129457
Alignment:
| Q |
28 |
acaaatattgattttgaatgaattgattctttaaaat |
64 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
38129421 |
acaaaaattgattttgaatgaattgattctgtaaaat |
38129457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University