View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17725_high_1 (Length: 407)
Name: NF17725_high_1
Description: NF17725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17725_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 4503411 - 4503627
Alignment:
| Q |
18 |
ggaccgggtctatattagataaccccttcaaactttatatgtattcgtgaattaaatagttataaagttactcacaaattgattgacctaaatttatctt |
117 |
Q |
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| T |
4503411 |
ggaccgggtctatattagataaccccttcaaactttatatgtattcgtgaattaaatagttataaagtaactcacatattgattgacctaaatttatctt |
4503510 |
T |
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| Q |
118 |
aggttttgtgagctaagtgaattcacacctacaactaagattgagatcaagatattaatgaacttcaattaaagaacaatcttttgagagaacccaggtt |
217 |
Q |
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| T |
4503511 |
aggttttatgagctaagtgaattcacacctacaactaagattgagatcaagatattaatgaaattcaattaaagaacaatcttttgagagaacccaagtt |
4503610 |
T |
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| Q |
218 |
gtatcattactggaata |
234 |
Q |
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| T |
4503611 |
gtatcattactggaata |
4503627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 238 - 402
Target Start/End: Original strand, 4503903 - 4504072
Alignment:
| Q |
238 |
acgtattggtcaaactttaatcgtacctccaaacaaatttcaaattttcatgtgnnnnnnn-----cttgagaagagaagggttaataaccacaaatatt |
332 |
Q |
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| T |
4503903 |
acgtattggtcaaactttaatcgtacctccaaacaaatttcaaattttcatgtgttttttttttttcttgagaacagaagggttaataaccacaaatatt |
4504002 |
T |
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| Q |
333 |
aaactcacctacnnnnnnnnnnnnnnnnnntgcaaatgttggagacaattcaactgctacctatgcttct |
402 |
Q |
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| T |
4504003 |
aaactcacctacaaaaaccaaaaaaccaaatgcaaatgttggagacaattcaactgctacctctgcttct |
4504072 |
T |
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