View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17725_low_1 (Length: 517)
Name: NF17725_low_1
Description: NF17725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17725_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 6 - 499
Target Start/End: Complemental strand, 51771284 - 51770787
Alignment:
| Q |
6 |
aggagcagagagaaagttgaaaatggcctttcaccggccttccccaaaacttgctcaatgcctgcaaatactattactgtctctataccctaaccaatcg |
105 |
Q |
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| T |
51771284 |
aggaacagagagaaagttgaaaatggcctttcaccggccttccccaaaacttgctcaatgcctgcaaatactattactgtctctataccctaaccaatcc |
51771185 |
T |
|
| Q |
106 |
attttcccattttagaaaacaacactctttctctctcaagtagtaacatcaagaaagggaga----gtgagtgagagaagcaattagcagcaataacatc |
201 |
Q |
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| T |
51771184 |
attttcccattttagaaaacaacactctttctctctcaagtagtaacatcaagaaagggagagtgtgtgagtgagagaagcaattagcagcaataacatc |
51771085 |
T |
|
| Q |
202 |
attatcgactgaaagacaagaagaaggcttggcttgactatcatcattttcattctgttttacagccaccagcaatggatgtgtttgtggtggacacggt |
301 |
Q |
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| T |
51771084 |
attatcgactgaaagacaagaagaaggcttggcttgactatcatcattttcattctgttttacagctaccagcaatggatgtgtttgtggtggacacggt |
51770985 |
T |
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| Q |
302 |
ggcggtggttgtttcatcttcttccacnnnnnnnnnnnnnnnnnnnctagcagcaacatgcaatgacccttatacccttgctcacaaacaggtggtggtt |
401 |
Q |
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||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51770984 |
ggcggtggttgtttcatcttcttccacagtagtagtagtagtagtagtactagcagcatgcaatgacccttatacccttgctcacaaacaggtggtggtt |
51770885 |
T |
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| Q |
402 |
ctctttgcaaatccaacaacaacctcgttgctcatcagacattgacatcgtaccattgcatttgcgtccattaaggcagacaggttgaagccaggcat |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51770884 |
ctctttgcaaatccaacaacaacctcgttgctcatcagacattgacatcgtaccattgcatttgcgtccattaaggcagacaggttgaagccaggcat |
51770787 |
T |
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