View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17725_low_2 (Length: 427)
Name: NF17725_low_2
Description: NF17725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17725_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 37847233 - 37847046
Alignment:
| Q |
15 |
tcagttctgttcatatctacttataatcctacaagagaaagtcagagatagataaaattaagtcatatattttctgttatatctagtatccatttgtgta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37847233 |
tcagttctgttcatatctacttataatcctacaagagaaagtcagagatagataaaattaagtcatatattttctgttatatctagtatccatttgtgta |
37847134 |
T |
|
| Q |
115 |
gtttgctaagatttggttattttcatatatgttggttaacctcctaatcatgaattaacaatattttgttccccaaatacatgatacc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37847133 |
gtttgctaagatttggttattttcatatatgttggttaacctcctaatcatgaattaacaatattttgttccccaaatacatgatacc |
37847046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 286 - 413
Target Start/End: Complemental strand, 37846927 - 37846799
Alignment:
| Q |
286 |
acatggttgggatagaacctcgatccctgcatgtatttcgcaatgtcccgaccaaaccgagctaagctcaca-ggacttattttttaggtatgaatctaa |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
37846927 |
acatggttgggatagaacctcgatccctgcatgtatttcgcaatgtcccgaccaaatcaagctaagctcacagggacttattttttaggtatgagtctaa |
37846828 |
T |
|
| Q |
385 |
ccattagtgaggccagcctggattattct |
413 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37846827 |
ccattagtgaggccagcctggattattct |
37846799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 37847015 - 37846960
Alignment:
| Q |
233 |
caatggagatgcagcccatgctgttttgtcaatggagatggtagtcaatgccgaca |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37847015 |
caatggagatgcagcccatgctgttttgtcaatggagatggtagtcaatgccgaca |
37846960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University