View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17726_high_5 (Length: 449)
Name: NF17726_high_5
Description: NF17726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17726_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 6179738 - 6179293
Alignment:
| Q |
1 |
atgaggcaaattgttaaatatagatgtgttggggagtccaatgagtgccggaagtaataactagtcaatgttctatgaccataagagagatgtcacatga |
100 |
Q |
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| T |
6179738 |
atgaggcaaattgttaaatatagatttgttggggagtccaatgagtgccgggagtaataactagtcaatgttctatgaccataagagagatgtcacatga |
6179639 |
T |
|
| Q |
101 |
tctccttccaaaaccttaagacattagacgaatcacttaaattatatgtctaacattttactcattcataacgatatagcactcaaccac---------- |
190 |
Q |
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| T |
6179638 |
tctccttccaaaaccttaagacattagacaaatcacttaaattatatgtctaacattttactcattcataacgatatagcactcaaccaccgacagttaa |
6179539 |
T |
|
| Q |
191 |
---tcaacaagatagaatagatgtttacacatgattgaatttcttgaatgaaatattgagaaaaatataaacataaatgagaaatgtcatccaaacatga |
287 |
Q |
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| T |
6179538 |
aactcaacaagatagaatagatgtttacacatgattggatttcttgaatgaaatattgagaaaaatataaacataaatgagaaatgtcatccaaacatga |
6179439 |
T |
|
| Q |
288 |
gtgcatgatcttgttaccaagttgaggtctgacattgattgtttctttgggcatgcatgatttgtagttatttttgtttgctctgatggatactccaata |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6179438 |
gtgcatgatcttgttaccaagttgaggtctgacattgattgtttctttgggcatgcatgatttgtagttatttttgtttgctctgatggatactccaata |
6179339 |
T |
|
| Q |
388 |
tactaccaaaataaaaaacaataaactctagaatctagttcaaatat |
434 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6179338 |
tactaccaaaataaaaaa-aataaactctagaatctagttcaaatat |
6179293 |
T |
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