View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17726_high_7 (Length: 387)
Name: NF17726_high_7
Description: NF17726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17726_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 54176548 - 54176920
Alignment:
| Q |
15 |
aatatattgcggagtaattttgttggattatcaggtccaataaaacttgattcagaaagatctctttttcgtcctgcctatgacatcattaatgttgttg |
114 |
Q |
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| T |
54176548 |
aatatattgcggagtaattttgttggattatcaggtccaataaaacttgattcagaaagatctctttttcgtcctgcctatgacatcattaatgttgttg |
54176647 |
T |
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| Q |
115 |
gaaatggtgttcgtcgagttggctactggtctaactattctggtctgtcaattgtatctcctgagacgttgtatgctaacccacctaataggtcaagtgc |
214 |
Q |
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| T |
54176648 |
gaaatggtgttcgtcgagttggctactggtctaactattctggtctgtcaattgtatctcctgagacgttgtatgctaacccacctaataggtcaagtgc |
54176747 |
T |
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| Q |
215 |
aaaccagcaccttcacactgtgatatggcctggagaaacaacatccaggccccgtggatgggttttcccaaacaatggcaaacaactgagaattggtgtg |
314 |
Q |
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| T |
54176748 |
aaaccagcaccttcacactgtgatatggcctggagaaacaacatccaggccccgtggatgggttttcccaaacaatggcaaacaactgagaattggtgtg |
54176847 |
T |
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| Q |
315 |
cctataagagccagttaccgtgaatttgtgtcaccagtgaagggaactgatttgtttaaagggttctgtgttg |
387 |
Q |
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| T |
54176848 |
cctataagagccagttaccgtgaatttgtgtcaccagtgaagggaactgatttgtttaaagggttctgtgttg |
54176920 |
T |
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