View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17726_high_8 (Length: 371)
Name: NF17726_high_8
Description: NF17726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17726_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 39099190 - 39098847
Alignment:
| Q |
18 |
atttaaagtataattaaaactttaaactacattaatctactcgtcaatcttttactgtagaataatattgttaacaaaccaattcaacaagaataaaatg |
117 |
Q |
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| T |
39099190 |
atttaaagtataattaaaactttaaactacattaatctactcgtcaatcttttactgtagaataatattgttaacaaaccaattcaacaagaataaaatg |
39099091 |
T |
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| Q |
118 |
caagagattttgcatttaatagcttcctaaactcttaagaagggcgtaaaatgtacaatcaaatgaaattatattaataaactaggtgatgaagatcatt |
217 |
Q |
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| T |
39099090 |
caagagattttgcatttaatagcttcctaaactcttaagaagggcgtaaaatgtacaatcaaatgaaattatattaataaactaggtgatgaagatcatt |
39098991 |
T |
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| Q |
218 |
tacctgaattaatttcctcttcaaatgattttagtaatgctttatattgattctctcttaactcaatgtccttcagttctccatcaaattcattatgcgt |
317 |
Q |
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| T |
39098990 |
tacctgaattaatttcctcttcaaatgattttagtaatgctttatattgattctctcttaactcaatgtccttcagttctccatcaaattcattatgcgt |
39098891 |
T |
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| Q |
318 |
tgactcggcaaccttcacttctccttcaaactgattctcctttg |
361 |
Q |
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| T |
39098890 |
tgactcggcaaccttcacttctccttcaaactgattctcttttg |
39098847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 178 - 361
Target Start/End: Complemental strand, 39603647 - 39603464
Alignment:
| Q |
178 |
aaatgaaattatattaataaactaggtgatgaagatcatttacctgaattaatttcctcttcaaatgattttagtaatgctttatattgattctctctta |
277 |
Q |
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| T |
39603647 |
aaatggaattgtcttaataaaccagatgatgaagatcgtttacctgatttaatttcctcgtcaaatgattttagtaatgcttcatattgatcctctctta |
39603548 |
T |
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| Q |
278 |
actcaatgtccttcagttctccatcaaattcattatgcgttgactcggcaaccttcacttctccttcaaactgattctcctttg |
361 |
Q |
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| T |
39603547 |
actcaagcttcttcagttctccatcaaattcattctgcattgactcaacatccttcacttctccttcaaattgattctcctttg |
39603464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 361
Target Start/End: Complemental strand, 39105890 - 39105804
Alignment:
| Q |
275 |
ttaactcaatgtccttcagttctccatcaaattcattatgcgttgactcggcaaccttcacttctccttcaaactgattctcctttg |
361 |
Q |
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| T |
39105890 |
ttaactcaatctctttcagttctccatcaaattcattcggcattgagtcaacatcctttacttctcctttaaactgattctcttttg |
39105804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 2362367 - 2362305
Alignment:
| Q |
205 |
gatgaagatcatttacctgaattaatttcctcttcaaatgattttagtaatgctttatattga |
267 |
Q |
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| T |
2362367 |
gatgaagagcttttacctgattcaatttcctcttcaaatgattttattaacgtttcatattga |
2362305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 51575572 - 51575491
Alignment:
| Q |
214 |
catttacctgaattaatttcctcttcaaatgattttagtaatgctttatattgattctctcttaactcaatgtccttcagtt |
295 |
Q |
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| T |
51575572 |
catttacctgattcaatttcctcttcaaaagattttataaatgtttcatattgattgtctcttaactcaagttccttcagtt |
51575491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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