View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17726_low_10 (Length: 324)
Name: NF17726_low_10
Description: NF17726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17726_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 14948077 - 14948289
Alignment:
| Q |
1 |
gtaaggtacatctttgtatcttgaaagagaacaaagtatacttgagagttac-------------aacgattttccataatatttgaaaagattgagatt |
87 |
Q |
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| T |
14948077 |
gtaaggtacatctttgtatcttgaaagagaacaaagtatacttgagagttacctcatccttaggcaacgattttccataatatttgaaaagattgagatt |
14948176 |
T |
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| Q |
88 |
tgaaattgttcattgttgcgatgaactccaattattccaagacaatcttttataaattgcatactttcagaaccaaattaaacatcaaactctcaaatat |
187 |
Q |
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| T |
14948177 |
tgaaattgttcattgttgcgatgaactccaattattccaagacaatcttttataaattgcatactttcagaaccaaattaaatatcaaactctcaaatat |
14948276 |
T |
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| Q |
188 |
acaaaatcaatct |
200 |
Q |
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| T |
14948277 |
acaaaatcaatct |
14948289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 14948701 - 14948793
Alignment:
| Q |
208 |
ctcagtatgaacaataatagggtggtgatcagactgcacatgcggaaagactttagctatcccatcgtgaaatctcaatctccaactgacatt |
300 |
Q |
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| T |
14948701 |
ctcagtatgaacaataatagggtggtgatcatactgcacacccgaaaagactttagctatcccatcatgaaatctcaatctccaactgacatt |
14948793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 31046212 - 31046270
Alignment:
| Q |
107 |
gatgaactccaattattccaagacaatcttttataaattgcatactttcagaaccaaat |
165 |
Q |
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| T |
31046212 |
gatgaactccaatgatttcaagacattattttataaattgcatattttcaaaaccaaat |
31046270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 29544550 - 29544478
Alignment:
| Q |
100 |
ttgttgcgatgaactccaattattccaagacaatcttttataaattgcatactttcagaaccaaattaaacat |
172 |
Q |
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| T |
29544550 |
ttgttgtgatgaactctgatgattctaagtcaatattttataaattgcatattttcaaaacaaaatcaaacat |
29544478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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