View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17726_low_12 (Length: 284)
Name: NF17726_low_12
Description: NF17726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17726_low_12 |
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| [»] scaffold0341 (4 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 748 - 538
Alignment:
| Q |
1 |
ttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtatagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
748 |
ttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtatagg |
649 |
T |
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| Q |
101 |
tggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
648 |
tggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatca |
552 |
T |
|
| Q |
201 |
ccatcaccaacacc |
214 |
Q |
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|||||||||||||| |
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| T |
551 |
ccatcaccaacacc |
538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8401 - 8191
Alignment:
| Q |
1 |
ttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtatagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8401 |
ttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtatagg |
8302 |
T |
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| Q |
101 |
tggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatca |
200 |
Q |
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| T |
8301 |
tggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatca |
8205 |
T |
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| Q |
201 |
ccatcaccaacacc |
214 |
Q |
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|||||||||||||| |
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| T |
8204 |
ccatcaccaacacc |
8191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 554 - 500
Alignment:
| Q |
225 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
279 |
Q |
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| T |
554 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 8207 - 8153
Alignment:
| Q |
225 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
279 |
Q |
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| T |
8207 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
8153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 6506723 - 6506513
Alignment:
| Q |
1 |
ttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtatagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6506723 |
ttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtatagg |
6506624 |
T |
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| Q |
101 |
tggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatca |
200 |
Q |
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| T |
6506623 |
tggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatca |
6506527 |
T |
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| Q |
201 |
ccatcaccaacacc |
214 |
Q |
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|||||||||||||| |
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| T |
6506526 |
ccatcaccaacacc |
6506513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 6522006 - 6522161
Alignment:
| Q |
1 |
ttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtatagg |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||| |||||| ||| |||| |
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| T |
6522006 |
ttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaata-----ggt-tagg |
6522099 |
T |
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| Q |
101 |
tggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaac |
162 |
Q |
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| T |
6522100 |
tgctagaattgttagacccagttgtaatttgagatatgaaaccaattcattcttctatcaac |
6522161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 6512630 - 6512451
Alignment:
| Q |
1 |
ttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtatagg |
100 |
Q |
| |
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||||||||||||||||||||||| || ||||||| ||||| ||||||| ||||||||||||| |||||||| |||||| |||| || ||||| |
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| T |
6512630 |
ttcaatgcacacctgatttgtctaaatcattgtgcgatgattgtttggtaaaatctatcaaagcaatcccaagatgttgtaacaacaggttgggt----- |
6512536 |
T |
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| Q |
101 |
tggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcat |
186 |
Q |
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| T |
6512535 |
-gctagaattgttagaccaagttgttatttgagatatgaaaccgattcactcttctatcaacaaacaccagatccaccctcatcat |
6512451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 6517028 - 6516855
Alignment:
| Q |
2 |
tcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggt |
101 |
Q |
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| T |
6517028 |
tcaatgcacacctgatttgtttaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgagt------ |
6516935 |
T |
|
| Q |
102 |
ggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaacaaacacaagattcaccttc |
181 |
Q |
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| |||| || |||||||||||||||||||||||||||||||| ||||||| || ||||||| |||||||||||||||||| |
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| T |
6516934 |
gctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaaccaacacaagattcaccttc |
6516855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 6506529 - 6506475
Alignment:
| Q |
225 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
279 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
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| T |
6506529 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
6506475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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