View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17726_low_14 (Length: 278)
Name: NF17726_low_14
Description: NF17726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17726_low_14 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 28940887 - 28940610
Alignment:
| Q |
1 |
tgctaagtaatgaaggccaacattaatattggttaaggagaaactatttagaacataaaaaacaaacttattatagactacttgtcttgaggttttaggt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28940887 |
tgctaagtaatgatggccaacattaatattgtttaagaagaaactatttagaacataaaaaacaaacttattatatactacttgtcttgaggttttaggt |
28940788 |
T |
|
| Q |
101 |
tataatatgacattaaaatcataattatgatttatatcattaatatcatgattaatgtctggctgaatttagatcctcttgtgtatcccctgacaagtgg |
200 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28940787 |
tataatataacattaaaatctcaattatgatttatatcattaatatcatgattaatgtctggctgattttagatcctcttgtgtatcccctgacaagtgg |
28940688 |
T |
|
| Q |
201 |
ttagttagtcttcaatcatcctatgttatagagaaagtatatgtgagtgacaacaatccacgcggaaatctccttact |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28940687 |
ttagttagtcttcaatcatcctatgttatagagaaagtatatgtgagtgacaacaatccacgcggaaatctccttact |
28940610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University