View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17726_low_15 (Length: 275)

Name: NF17726_low_15
Description: NF17726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17726_low_15
NF17726_low_15
[»] scaffold0341 (2 HSPs)
scaffold0341 (1-261)||(796-1056)
scaffold0341 (1-261)||(8449-8710)
[»] chr1 (9 HSPs)
chr1 (1-261)||(6506771-6507031)
chr1 (133-261)||(6521704-6521832)
chr1 (1-261)||(6517077-6517331)
chr1 (4-260)||(6512681-6512931)
chr1 (133-242)||(47778041-47778150)
chr1 (157-242)||(6523725-6523810)
chr1 (157-222)||(47781969-47782034)
chr1 (133-222)||(47788183-47788272)
chr1 (1-63)||(6521896-6521958)
[»] chr7 (1 HSPs)
chr7 (181-259)||(722227-722305)


Alignment Details
Target: scaffold0341 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 796 - 1056
Alignment:
Q  1 cctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  796 cctacagcatatttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct 895  T
Q  101 ttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  896 ttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtc 995  T
Q  201 gtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  996 gtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattt 1056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 8449 - 8710
Alignment:
Q  1 cctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8449 cctacagcatatttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct 8548  T
Q  101 ttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8549 ttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtc 8648  T
Q  201 gtaccatccaattgcttcttttcg-attttgacaaagttgtgttagaagggcagttgaattt 261  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8649 gtaccatccaattgcttcttttcgtattttgacaaagttgtgttagaagggcagttgaattt 8710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 6506771 - 6507031
Alignment:
Q  1 cctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6506771 cctacagcatatttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct 6506870  T
Q  101 ttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6506871 ttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtc 6506970  T
Q  201 gtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6506971 gtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattt 6507031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 133 - 261
Target Start/End: Complemental strand, 6521832 - 6521704
Alignment:
Q  133 gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac 232  Q
    |||||||| ||||| |||| ||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||    
T  6521832 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgac 6521733  T
Q  233 aaagttgtgttagaagggcagttgaattt 261  Q
    || |||||||||||||  |||||||||||    
T  6521732 aatgttgtgttagaagaacagttgaattt 6521704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 6517077 - 6517331
Alignment:
Q  1 cctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcct 100  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||| ||||||||||||| || |||||||||||||||      |||| |    
T  6517077 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttatcaaattcat------cttcat 6517170  T
Q  101 ttgttgcgttctgcaaattccatgcaatcat-ggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgt 199  Q
    || | ||  ||| |||| |||||||  ||||    |||||   | |||| || ||||||||||||||||  |||| |||||||||||||| | ||||| |    
T  6517171 ttatcgccgtcttcaaactccatgc-ttcataataaggtctagtgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcat 6517269  T
Q  200 cgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattt 261  Q
    ||||||| |||||||||| ||||| |||||||||| ||||||||||||   |||||||||||    
T  6517270 cgtaccaaccaattgcttgttttctattttgacaacgttgtgttagaaacacagttgaattt 6517331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 260
Target Start/End: Original strand, 6512681 - 6512931
Alignment:
Q  4 acagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttg 103  Q
    |||||||||||||||||||| || || |||| |||| ||||| ||||||||| ||| |||||||||||  |||||||||||||||||||       ||||    
T  6512681 acagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatccaataaatttttcagtactttatcaaattcatcttca------tttg 6512774  T
Q  104 ttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgta 203  Q
    | || || | |||| ||||| | |       |||||   ||||||| | ||| ||||||||||||| |||| |||||||||||||| | || || || ||    
T  6512775 tagcattgttcaaactccatcctaaataaaaaggtctagtttcattcagaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcata 6512874  T
Q  204 ccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaatt 260  Q
    ||| ||||| || ||||||||||||||||||||||||||||||| | ||| ||||||    
T  6512875 ccaaccaatagcctcttttcgattttgacaaagttgtgttagaaagacagatgaatt 6512931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 47778150 - 47778041
Alignment:
Q  133 gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac 232  Q
    |||||||| ||||||||||  | |||||||||||||| |||| |||||||||||||||||||||| |||||||| ||||||||||| |||   ||| |||    
T  47778150 gcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggac 47778051  T
Q  233 aaagttgtgt 242  Q
    ||||||||||    
T  47778050 aaagttgtgt 47778041  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 6523810 - 6523725
Alignment:
Q  157 aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgt 242  Q
    ||||| ||||||| |||  |||||||||||||||||||||| || ||||| ||||||||||||||| | ||| ||||||| |||||    
T  6523810 aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttttggtttggacaaagctgtgt 6523725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 47782034 - 47781969
Alignment:
Q  157 aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt 222  Q
    ||||| ||||||| |||  |||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  47782034 aatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctttt 47781969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 47788272 - 47788183
Alignment:
Q  133 gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctttt 222  Q
    |||||||| ||||| || | ||| | ||||||||||| |||  |||| ||||| ||||| ||||| ||||||||||||||||||||||||    
T  47788272 gcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctttt 47788183  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6521958 - 6521896
Alignment:
Q  1 cctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaa 63  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||| ||||| ||| ||| |||    
T  6521958 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaactatccaaaaaa 6521896  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 722305 - 722227
Alignment:
Q  181 aacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaat 259  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| ||||   || |||||||||||||| || ||||||    
T  722305 aacatgcatttttcatcatcgtacaatccaattgcttcttttcggttttataaatgttgtgttagaaggacaattgaat 722227  T

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