View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17726_low_2 (Length: 571)

Name: NF17726_low_2
Description: NF17726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17726_low_2
NF17726_low_2
[»] chr4 (2 HSPs)
chr4 (18-313)||(46265551-46265847)
chr4 (18-313)||(46023518-46023816)
[»] chr5 (4 HSPs)
chr5 (453-557)||(37605842-37605946)
chr5 (318-383)||(37606023-37606088)
chr5 (470-549)||(5742432-5742511)
chr5 (470-549)||(33361025-33361104)
[»] chr7 (2 HSPs)
chr7 (455-557)||(27658118-27658220)
chr7 (312-382)||(27656838-27656908)
[»] chr6 (2 HSPs)
chr6 (318-383)||(31559487-31559552)
chr6 (470-549)||(18085301-18085380)
[»] scaffold0856 (1 HSPs)
scaffold0856 (470-549)||(1272-1351)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 46265551 - 46265847
Alignment:
Q  18 tatgtaacaatgaggttcatgaatgaggtaattaattaatttaataacatgttgtttgtcagattttggttttgttttcttctttgaagaaggcatctga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46265551 tatgtaacaatgaggttcatgaatgaggtaattaattaatttaataacatgttgtttgtcagattttggttttgttttcttctttgaagaaggcatctga 46265650  T
Q  118 ttcaaaatggattcatgcaagtgtgaggaaataccaatcctttatattttgataaacataactaaaatgtggttaaatagaatgatgaatagtataaata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||    
T  46265651 ttcaaaatggattcatgcaagtgtgaggaaataccaatcctttatattttgataaacataactaaaatgtggttaagtagaataatgaatagtatacata 46265750  T
Q  218 ttct-caaaaaatgaaatgtaaacggtttagtcgtttagatgaagactaatgttgatttttcacacattctctattttccatgtcacatatatgtat 313  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46265751 ttctaaaaaaaatgaaatgtaaacggtttagtcgtttagatgaagactaatgttgatttttcacacattctctattttccatgtcacatatatgtat 46265847  T

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Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 46023816 - 46023518
Alignment:
Q  18 tatgtaacaatgaggttcatgaatgaggtaattaattaatttaataacatgttgtttgtcagattttggttttgttttcttctttgaagaaggcatctga 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46023816 tatgtaacaatgaggttcatgaatgaggtaattaattaaattaataacatgttgtttgtcagattttggttttgttttcttctttgaagaaggcatctga 46023717  T
Q  118 ttcaaaatggattcatgcaagtgtgaggaaataccaatcctttatattttgataaacataactaaaatgtggttaaatagaatgatgaatagtataaata 217  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  46023716 ttcaaattggattcatgcaagtgtgaggaaataccaatcgtttatattttgataaacataactaaaatgtggttaaatagaatgatgaatagtatacata 46023617  T
Q  218 ttct---caaaaaatgaaatgtaaacggtttagtcgtttagatgaagactaatgttgatttttcacacattctctattttccatgtcacatatatgtat 313  Q
    ||||    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  46023616 ttctaaaaaaaaaatgaaatttaaacggtttagtcgtttagatgaagactaatgttgatttttcacaaattctcaattttccatgtcacatatatgtat 46023518  T

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Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 453 - 557
Target Start/End: Complemental strand, 37605946 - 37605842
Alignment:
Q  453 cacttgtttcgttttccttccctctttctgattcactcatttcctatgagcaagaacaaatcatctttcattcactcataggttctcgtcactccttatt 552  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  37605946 cacttgtttcgttttccttccctctttctgaatcactcatttcctatgagcaagaaaaaatcatctttcattcactcataggttctcgtcactccttctt 37605847  T
Q  553 catct 557  Q
    |||||    
T  37605846 catct 37605842  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 37606088 - 37606023
Alignment:
Q  318 aatgataattaaacacaataatacaaacacaaatatgacaccatacactgttactcaatacttatg 383  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37606088 aatgataagtaaacacaataatacaaacacaaatatgacaccatacactgttactcaatacttatg 37606023  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 470 - 549
Target Start/End: Original strand, 5742432 - 5742511
Alignment:
Q  470 ttccctctttctgattcactcatttcctatgagcaagaacaaatcatctttcattcactcataggttctcgtcactcctt 549  Q
    |||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||  ||| | ||| |||||||||    
T  5742432 ttccctctttctgattcactaatttcctatgagaaagaactaatcatctttcattcactagtagttgctcatcactcctt 5742511  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 470 - 549
Target Start/End: Complemental strand, 33361104 - 33361025
Alignment:
Q  470 ttccctctttctgattcactcatttcctatgagcaagaacaaatcatctttcattcactcataggttctcgtcactcctt 549  Q
    |||||||||||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  |||||||||||||||    
T  33361104 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactcctt 33361025  T

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Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 455 - 557
Target Start/End: Original strand, 27658118 - 27658220
Alignment:
Q  455 cttgtttcgttttccttccctctttctgattcactcatttcctatgagcaagaacaaatcatctttcattcactcataggttctcgtcactccttattca 554  Q
    |||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  27658118 cttgtttcgttttccttctctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttca 27658217  T
Q  555 tct 557  Q
    |||    
T  27658218 tct 27658220  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 27656838 - 27656908
Alignment:
Q  312 atcagaaatgataattaaacacaataatacaaacacaaatatgacaccatacactgttactcaatacttat 382  Q
    |||| ||||||||| ||||||||| |||||||||||||| |||| |||||| |||||| ||||||||||||    
T  27656838 atcataaatgataagtaaacacaaaaatacaaacacaaaaatgataccatagactgttcctcaatacttat 27656908  T

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Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 318 - 383
Target Start/End: Original strand, 31559487 - 31559552
Alignment:
Q  318 aatgataattaaacacaataatacaaacacaaatatgacaccatacactgttactcaatacttatg 383  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31559487 aatgataagtaaacacaataatacaaacataaatatgacaccatacactgttactcaatacttatg 31559552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 470 - 549
Target Start/End: Complemental strand, 18085380 - 18085301
Alignment:
Q  470 ttccctctttctgattcactcatttcctatgagcaagaacaaatcatctttcattcactcataggttctcgtcactcctt 549  Q
    |||||||||||||||||| |||||||| || | ||||||||||| |||||||||||||| |||  |||||||||||||||    
T  18085380 ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactcctt 18085301  T

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Target: scaffold0856 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 470 - 549
Target Start/End: Complemental strand, 1351 - 1272
Alignment:
Q  470 ttccctctttctgattcactcatttcctatgagcaagaacaaatcatctttcattcactcataggttctcgtcactcctt 549  Q
    |||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||  |||||||||||||||    
T  1351 ttccctctttctgattcagtcatttcccatgatcaagaacaaatcatctttcattcactaataatttctcgtcactcctt 1272  T

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