View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17726_low_3 (Length: 570)
Name: NF17726_low_3
Description: NF17726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17726_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 27 - 550
Target Start/End: Complemental strand, 9475643 - 9475118
Alignment:
| Q |
27 |
aaattcatagatcacatttgaaaattcatgatttgtcgattttttagattgaagtaaaaatgttgacttcgatattctttgacaaattcgatcgctaata |
126 |
Q |
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| T |
9475643 |
aaatttatatatcacatttgaaaattcatgatttgtcgattttttagattgaaataaaaatgttgacttcgatattctttgacaaatttgatcgctaata |
9475544 |
T |
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| Q |
127 |
acacatgtgttatcattctcactcttaaacatcttttttctcatttcctttttattcaattctcctatacaaa--tactaagttgtctagcatgagtacc |
224 |
Q |
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| T |
9475543 |
acacatgtgttatcattctcact-ttaaacatcttttttctcatttcctttttattcaattctcctatacaaaaatactaagttgtatagcatgagtacc |
9475445 |
T |
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| Q |
225 |
gccattttaggacacaagtgacttattattgttgtctaataggactggcatgaagagaaaaagatactaaattgcaaacaaaataattttattcgataca |
324 |
Q |
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| T |
9475444 |
accattttaggacacaagtggcttattattgttgtctaataggactggcatgaagagaaaaagatactaaattgcaaacaaaataattttattcgataca |
9475345 |
T |
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| Q |
325 |
aatttgcaaacaaaataatgaaaacggatcagacttgttttcttt-aacatgcatcattttgctatgcacaatgttatatccaactttagcattggagat |
423 |
Q |
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| T |
9475344 |
aatttgcaaacaaaataatgaaaacggatcagacttgttttcttttaacatgcatcattttgctatgcacaatgttatatccaactttagcataggagat |
9475245 |
T |
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| Q |
424 |
aatgggacgcattgtcatcatagttggcttatggctgtttccaatcatttatcctatattataattcatatctaactatgatattagttatcactactat |
523 |
Q |
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| T |
9475244 |
aatgggacgcattgtcatcatagttggcttatggctgtttccaatcatttatcctatattataattcatatctaactatgatattagttatcactactat |
9475145 |
T |
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| Q |
524 |
ttaatttagctaaaattcatatgccta |
550 |
Q |
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| T |
9475144 |
ttaatttagctataattcatatgccta |
9475118 |
T |
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