View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17726_low_4 (Length: 542)
Name: NF17726_low_4
Description: NF17726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17726_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 336
Target Start/End: Original strand, 28257675 - 28257996
Alignment:
| Q |
15 |
caaagggtattcgacctatggttcatgaacataatgagcaaggtaattttgaagtagtagggaaaaaatgggcattactagttgctggttcaaaagatta |
114 |
Q |
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| T |
28257675 |
caaagggtattcgacctatggttgatgaacataatgagcaaggtaattttgaagtagtaaggaaaaaatgggcattactagttgctggttcaaaagatta |
28257774 |
T |
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| Q |
115 |
cccaaattataggcaccaagcaaatatttgtcatgcctaccatgtattaaaaaatggtggccttcaagatgaaaacataattgttttcatgtatgatgat |
214 |
Q |
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| T |
28257775 |
cccaaattataggcaccaagccaatatttgtcatgcctaccatgtattaaaaaatggtggccttcaagatgaaaacataattgttttcatgtatgatgat |
28257874 |
T |
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| Q |
215 |
attgcctaccataaagaaaatccaaggcaaggtgttataatcaataggccagatggtcctaatgtttatcctggtgttcctaaggtatatacttcaattt |
314 |
Q |
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| T |
28257875 |
attgcctaccataaagaaaatccaaggcaaggtgttataatcaataggccagatggtcctaatgtttatcctggtgttcctaaggtatatacttcaattt |
28257974 |
T |
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| Q |
315 |
tccggataaattaatttagcac |
336 |
Q |
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| T |
28257975 |
tccggataaattaatttagcac |
28257996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 24 - 304
Target Start/End: Original strand, 29926985 - 29927265
Alignment:
| Q |
24 |
ttcgacctatggttcatgaacataatgagcaaggtaattttgaagtagtagggaaaaaatgggcattactagttgctggttcaaaagattacccaaatta |
123 |
Q |
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| T |
29926985 |
ttcgtcctatggttcataaacatgacgagcaaggtaattttgaagtagtagggaaaaaatgggctttactggttgctggttcaaaaggttactccaatta |
29927084 |
T |
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| Q |
124 |
taggcaccaagcaaatatttgtcatgcctaccatgtattaaaaaatggtggccttcaagatgaaaacataattgttttcatgtatgatgatattgcctac |
223 |
Q |
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| T |
29927085 |
taggcaccaatctaatatttgtcatgcctaccatatattaaaaagtggtggtcttcaagatgaaaacataattgttttcatgtatgatgatattgcctac |
29927184 |
T |
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| Q |
224 |
cataaagaaaatccaaggcaaggtgttataatcaataggccagatggtcctaatgtttatcctggtgttcctaaggtatat |
304 |
Q |
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| T |
29927185 |
cataatgaaaatccaagacctggtgttataatcaatagaccggatggtcctaatgtttatcctggtgttcctaaggtatat |
29927265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 403 - 525
Target Start/End: Original strand, 28258063 - 28258185
Alignment:
| Q |
403 |
tatcttcatttataatacagtggtgagatttcaggattatacagggaataatacaaatgcagaaaacttttttgctgtgcttaatggcaacctaaatggt |
502 |
Q |
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| T |
28258063 |
tatcttcatttataatacagtggtgagatttcaggattatacagggaataatacaaacgcagaaaacttttttgctgtgcttaatggcaacctaagtggt |
28258162 |
T |
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| Q |
503 |
attactggagggagtggtaaagt |
525 |
Q |
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| T |
28258163 |
attactggagggagtggtaaagt |
28258185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 411 - 525
Target Start/End: Original strand, 29927442 - 29927556
Alignment:
| Q |
411 |
tttataatacagtggtgagatttcaggattatacagggaataatacaaatgcagaaaacttttttgctgtgcttaatggcaacctaaatggtattactgg |
510 |
Q |
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||||||||| |||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||| || || |
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| T |
29927442 |
tttataatatagtggtgaaatttcaggactacacagggaacaatacaaatgcagaaaacttttttgctgtgcttaatggtaacctaagtggtatcaccgg |
29927541 |
T |
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| Q |
511 |
agggagtggtaaagt |
525 |
Q |
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| T |
29927542 |
agggagtggtaaagt |
29927556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 11323343 - 11323492
Alignment:
| Q |
73 |
agggaaaaaatgggcattactagttgctggttcaaaagattacccaaattataggcaccaagcaaatatttgtcatgcctaccatgtattaaaaaatggt |
172 |
Q |
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|||||| |||||||| || |||||||| || || || | |||| ||||||||||||||||| ||||||| |||||||| || |||||||||| || |
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| T |
11323343 |
agggaagaaatgggcctttctagttgcaggatcgaatggttacgtgaattataggcaccaagccgatatttgccatgcctatcaaatattaaaaaaaggc |
11323442 |
T |
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| Q |
173 |
ggccttcaagatgaaaacataattgttttcatgtatgatgatattgccta |
222 |
Q |
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| T |
11323443 |
ggtcttaaagatgaaaacatcgttgttttcatgtacgatgacattgccta |
11323492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 4493556 - 4493595
Alignment:
| Q |
180 |
aagatgaaaacataattgttttcatgtatgatgatattgc |
219 |
Q |
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| T |
4493556 |
aagaagaaaacattattgttttcatgtatgatgatattgc |
4493595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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