View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17726_low_6 (Length: 435)
Name: NF17726_low_6
Description: NF17726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17726_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 9 - 419
Target Start/End: Complemental strand, 46843867 - 46843457
Alignment:
| Q |
9 |
agcagagagacaccctttgaagactccatgagtagaatttgaagtttcaatttcattagcacacccaaatgaagattttcccacaggagagagtgaaaag |
108 |
Q |
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| T |
46843867 |
agcagagagacaccctttgaagactccatgagtagaatttgaagtttcaatttcattagcacacccaaatgaagattttcccacaggagagagtgaaaag |
46843768 |
T |
|
| Q |
109 |
cttccagaagaagaacccaaatgagaatttcttgtgttgatgctgaaatcacctctagataaaggtgatgattcagatgaagaagaaaaagttgaaattg |
208 |
Q |
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| T |
46843767 |
cttccagaagaagaacccaaatgagaatttcttgtgttgatgctgaaatcacctctagataaaggtgatgattcagatgaagaagaaaaagttgaaattg |
46843668 |
T |
|
| Q |
209 |
ttggtaaaaagggaggaatctgaatcctcaactgagatccaaacagaacagttttgttctctggttttgaattcacttcactgnnnnnnncatctacaag |
308 |
Q |
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| T |
46843667 |
ttggtaaaaagggaggaatctgaatcttcaactgagatccaaacagaacagttttgttctctggttttgaattcacttcactgtttttttcatctacaag |
46843568 |
T |
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| Q |
309 |
aacatcaacaagaccaagaccaacaacttttgactccaatttatcccaacaacgtttgtgttcaccacaaacatgttgtgttctagggctatttgtttca |
408 |
Q |
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| T |
46843567 |
aacatcaacaagaccaagaccaacaacttttgactccaatttatcccaacaacgtttgtgttcaccacaaacatgttgtgttatagggctatttgtttca |
46843468 |
T |
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| Q |
409 |
gaccaaaaagg |
419 |
Q |
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| T |
46843467 |
gaccaaaaagg |
46843457 |
T |
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