View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17726_low_7 (Length: 395)
Name: NF17726_low_7
Description: NF17726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17726_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 49370102 - 49370454
Alignment:
| Q |
17 |
actaactagctcgaacaggcacccgaatccatttttgggtttgataataacataactattgttttttcatctgttacaaaaatcctgattataggcagct |
116 |
Q |
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| T |
49370102 |
actaactagctcgaaccggcacccgaatccatttttgggtttgataataacataactattgttttttcatctgttacaaaaatcctgatcataggcagct |
49370201 |
T |
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| Q |
117 |
atattaccattcttttnnnnnnnnctactactcctgcgaggttaagcaaaattattacacttgcattgaaataaatataccactttagttaagattacac |
216 |
Q |
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| T |
49370202 |
atattaccattcttttaa-------taaaa--------aggttaagcaaaatta---cacttgcattgaaataaatataccactttagttaagattacac |
49370283 |
T |
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| Q |
217 |
atagatgaatttgagattacacataaaacataaaattgtatttgtttacaacatttgaaatatcatcaaatttgaaatatcaacgagaaacaggaagaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49370284 |
atagatgaatttgagattacacataaaacataaaattgtatttgtttacaacatttgaaatatcatcaaatttgaaatatcaacgagaaacaggaagaac |
49370383 |
T |
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| Q |
317 |
cttattaacaatatcctggctaagagcagcaatctgagaatcaagagctttaacagtttcttccctttgct |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49370384 |
cttattaacaatatcctggctaagagcagcaatctgagaatcaagagctttaacagtttcttccttttgct |
49370454 |
T |
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