View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17727_high_1 (Length: 740)
Name: NF17727_high_1
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 274 - 726
Target Start/End: Original strand, 38489615 - 38490067
Alignment:
| Q |
274 |
ctcattaatttcatcggtcattaaaatccactttgttgtgacaaacaaacattgttcaatactttatgcctacatagacatcaaatgttatattttgaca |
373 |
Q |
| |
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||||||||||||||| |||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38489615 |
ctcattaatttcatcagtcattgaaatcctctttgttttgacaaacaaacattgttcaatactttatgcctacatagacatcgaatgttatattttgaca |
38489714 |
T |
|
| Q |
374 |
gaacctggatttcattcaagtttcaagcaatcaattaaaactcaatatatatcatagctttacattttaccagtattcatataatcgaaaggataatttg |
473 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38489715 |
gaacctagatttcattcaagtttcaagcaatcaattaaaactcaaaatatatcatagctttacattttaccagtattcatataatcgaaaggagaatttg |
38489814 |
T |
|
| Q |
474 |
attacacggatttgatattttttcactgaacaaagttatataatataacacccnnnnnnnttcatacataaaaaaccactacaggttcttnnnnnnncat |
573 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| |
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| T |
38489815 |
attacacggatttgttattttttcactgagcaaagttatataatataactcccaaaaaaattcatacataaaaaaccactacaggttcttaaaaaaacat |
38489914 |
T |
|
| Q |
574 |
ggtgtatatgtcattatcaatataatcaaataaaattttacacgatgtagagnnnnnnnttatgtatgaatataatttcactaacacttggtccttttca |
673 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38489915 |
ggtgtatacgtcattatcaatataatcaaataaaattttacatgctgtagagcccccccttatgtatgaatataatttcactaacacttggtccttttca |
38490014 |
T |
|
| Q |
674 |
aggcagtttctctgaattttcatggtctctagtacctttgaatggtgcataat |
726 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38490015 |
aggcagtttctctgaattttcatggtctctagtacctttgaatggtgcataat |
38490067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 25450628 - 25450871
Alignment:
| Q |
9 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
108 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25450628 |
gacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgt |
25450727 |
T |
|
| Q |
109 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25450728 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
25450827 |
T |
|
| Q |
209 |
acagccgtgtgtaaaatacagcagaaatatattagcctttgtta |
252 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
25450828 |
acagccgtgtgtaaaatatagcagaaatatattagcctttgtta |
25450871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 25446065 - 25446308
Alignment:
| Q |
9 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
108 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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|
| T |
25446065 |
gacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatcaattgtcattagtcagtacaattgacttaccttattcatgt |
25446164 |
T |
|
| Q |
109 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25446165 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
25446264 |
T |
|
| Q |
209 |
acagccgtgtgtaaaatacagcagaaatatattagcctttgtta |
252 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
25446265 |
acaaccgtgtgtaaaatatagcagaaatatattagcctttgtta |
25446308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 2607085 - 2606833
Alignment:
| Q |
9 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||| |
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|
| T |
2607085 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaattgtcattagttagtacaattgacttaccttattcatgt |
2606986 |
T |
|
| Q |
109 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2606985 |
acaattgttttgctctactgtaattccaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacatctataaagccttgt |
2606886 |
T |
|
| Q |
209 |
acagccgtgtgtaaa--atacagcagaaatatattagcctttgttattttata |
259 |
Q |
| |
|
|||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
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|
| T |
2606885 |
acagccatgtgtaaaatatatagcagaaatatattagcctttgttattttata |
2606833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 47367403 - 47367472
Alignment:
| Q |
388 |
ttcaagtttcaagcaatcaattaaaactcaatatatatcatagctttacattttaccagtattcatataatc |
459 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||| |
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|
| T |
47367403 |
ttcatgtttcaagcaatcaactaaaactca--atatatcatagttgtacattttactagcattcatataatc |
47367472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 31901369 - 31901622
Alignment:
| Q |
9 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||||||| |
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|
| T |
31901369 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttatgatcaactgtcattagtcagtaaagttgacttaccttattcatgt |
31901468 |
T |
|
| Q |
109 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31901469 |
acaattgttttgctctactgtaattcccattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
31901568 |
T |
|
| Q |
209 |
acagccgtgtgtaaa--atacagcagaaatatattagcctttgttattttatat |
260 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
31901569 |
acagccgtgtgtaaaagatatagcataaatatattagcctttgttattttatat |
31901622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 31925239 - 31925485
Alignment:
| Q |
12 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgtaca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
31925239 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacagttgacttaccttattcatgtaca |
31925338 |
T |
|
| Q |
112 |
attgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgtaca |
211 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
31925339 |
attgttttgctctactgtaattccaa-tcaataaatttaattattatgtaaatgcatttgattaccttgtaaagcttggacaactataaagccttgtaca |
31925437 |
T |
|
| Q |
212 |
gccgtgtgtaaa--atacagcagaaatatattagcctttgttatttta |
257 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||||||||||| |
|
|
| T |
31925438 |
accgtgtgtaaaagatatagcataaatatattagcctttgttatttta |
31925485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 379 - 454
Target Start/End: Complemental strand, 48446735 - 48446660
Alignment:
| Q |
379 |
tggatttcattcaagtttcaagcaatcaattaaaactcaatatatatcatagctttacattttaccagtattcata |
454 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||| ||||| || |||||||| |
|
|
| T |
48446735 |
tggatttctttcatgtttcaagcaatcaattaaaactcaaaatatatcatagttttatgttttatcactattcata |
48446660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 663 - 726
Target Start/End: Complemental strand, 48446490 - 48446427
Alignment:
| Q |
663 |
ggtccttttcaaggcagtttctctgaattttcatggtctctagtacctttgaatggtgcataat |
726 |
Q |
| |
|
|||| |||||||||||| | ||||||||| |||||||||| ||||| |||||||| |||||||| |
|
|
| T |
48446490 |
ggtcattttcaaggcaggtactctgaattgtcatggtctcgagtacgtttgaatgctgcataat |
48446427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 661 - 726
Target Start/End: Original strand, 13464556 - 13464621
Alignment:
| Q |
661 |
ttggtccttttcaaggcagtttctctgaattttcatggtctctagtacctttgaatggtgcataat |
726 |
Q |
| |
|
||||| ||||||||||||| | |||| |||| ||||||| |||||||| |||||||| |||||||| |
|
|
| T |
13464556 |
ttggtacttttcaaggcaggtactcttaattgtcatggtttctagtacgtttgaatgctgcataat |
13464621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 661 - 726
Target Start/End: Original strand, 14349684 - 14349749
Alignment:
| Q |
661 |
ttggtccttttcaaggcagtttctctgaattttcatggtctctagtacctttgaatggtgcataat |
726 |
Q |
| |
|
||||| ||||||||||||| | |||| |||| ||||||| |||||||| |||||||| |||||||| |
|
|
| T |
14349684 |
ttggtacttttcaaggcaggtactcttaattgtcatggtttctagtacttttgaatgctgcataat |
14349749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 683 - 726
Target Start/End: Complemental strand, 43099366 - 43099323
Alignment:
| Q |
683 |
ctctgaattttcatggtctctagtacctttgaatggtgcataat |
726 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
43099366 |
ctctgaattttcatagtctctagtacttttgaatgctgcataat |
43099323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 43099677 - 43099632
Alignment:
| Q |
381 |
gatttcattcaagtttcaagcaatcaattaaaactcaatatatatc |
426 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
43099677 |
gatttctttcaaatttcaagcaatcagttaaaactcaaaatatatc |
43099632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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