View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17727_high_14 (Length: 270)

Name: NF17727_high_14
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17727_high_14
NF17727_high_14
[»] chr5 (2 HSPs)
chr5 (14-228)||(11023309-11023539)
chr5 (42-91)||(34166118-34166167)
[»] chr4 (2 HSPs)
chr4 (167-199)||(32754622-32754654)
chr4 (169-199)||(19176663-19176693)
[»] chr6 (3 HSPs)
chr6 (165-195)||(1960344-1960374)
chr6 (167-195)||(32862774-32862802)
chr6 (167-195)||(34406444-34406472)
[»] chr8 (1 HSPs)
chr8 (167-195)||(30585118-30585146)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 11023539 - 11023309
Alignment:
Q  14 tctagtcacctgtctgacacatatacgcgattacattcaatcattttaattttcttaaattgttatctatgtctacatatcagtatcatgttcgtatgta 113  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  11023539 tctagtcacctgtctgacacatatatgcgattacattcaatcattttaattttcttaaattgttatcgatgtctacatatcagtatcatgtttgtatgta 11023440  T
Q  114 acaccaacaccttcaatcaaaggtgtgtttgatg----------------tattacacaacacaaccaattacattcaatcactttcattttcttaaact 197  Q
    |||||||||||||||||||||||||||| | |||                |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11023439 acaccaacaccttcaatcaaaggtgtgtctcatgtttcacatgtgccagttattacacaacacaaccaattacattcaatcaatttcattttcttaaact 11023340  T
Q  198 ataaaccgagtctacttatcagtgtcatgtc 228  Q
    |||||||| ||||||||||||||||||||||    
T  11023339 ataaaccgtgtctacttatcagtgtcatgtc 11023309  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 34166167 - 34166118
Alignment:
Q  42 gattacattcaatcattttaattttcttaaattgttatctatgtctacat 91  Q
    ||||||||||||||| ||| ||||||||||||| ||||  ||||||||||    
T  34166167 gattacattcaatcaatttcattttcttaaattattattgatgtctacat 34166118  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 32754654 - 32754622
Alignment:
Q  167 ttacattcaatcactttcattttcttaaactat 199  Q
    |||||||||||||||||||||||||||||||||    
T  32754654 ttacattcaatcactttcattttcttaaactat 32754622  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 199
Target Start/End: Complemental strand, 19176693 - 19176663
Alignment:
Q  169 acattcaatcactttcattttcttaaactat 199  Q
    |||||||||||||||||||||||||||||||    
T  19176693 acattcaatcactttcattttcttaaactat 19176663  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 1960344 - 1960374
Alignment:
Q  165 aattacattcaatcactttcattttcttaaa 195  Q
    |||||||||||||||||||||||||||||||    
T  1960344 aattacattcaatcactttcattttcttaaa 1960374  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 32862774 - 32862802
Alignment:
Q  167 ttacattcaatcactttcattttcttaaa 195  Q
    |||||||||||||||||||||||||||||    
T  32862774 ttacattcaatcactttcattttcttaaa 32862802  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 34406472 - 34406444
Alignment:
Q  167 ttacattcaatcactttcattttcttaaa 195  Q
    |||||||||||||||||||||||||||||    
T  34406472 ttacattcaatcactttcattttcttaaa 34406444  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 30585118 - 30585146
Alignment:
Q  167 ttacattcaatcactttcattttcttaaa 195  Q
    |||||||||||||||||||||||||||||    
T  30585118 ttacattcaatcactttcattttcttaaa 30585146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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