View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17727_high_3 (Length: 550)
Name: NF17727_high_3
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 45 - 541
Target Start/End: Original strand, 7353209 - 7353721
Alignment:
| Q |
45 |
ttaaaagtatactatttttagtcagtatataccaactttgttgcaatgtgagatttgtt-----------------cccactatgagcttggtgcaaaga |
127 |
Q |
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| T |
7353209 |
ttaaaagtatactatttttagtcagtatatatcaactttgttacaatgtgagatttgttaaagtatgagatttgttcccaatatgagcttggtgcaaa-a |
7353307 |
T |
|
| Q |
128 |
gtctatagtcacaatataataagcaaattagaatatatactaacagtgttcacttttgtttgacatttagagtaccaacaatgaaatggttggtttgcag |
227 |
Q |
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| T |
7353308 |
gtctatagtcacaatatactaagcaaattagaatatatactaacagtgttcacttttgtttgacatttagagtaccaacaatgaaatggttggtttgaag |
7353407 |
T |
|
| Q |
228 |
aatttctgcagttcaatccaagcgtctattacgactttggatgtgatagccaaatctaaaggcaccgagtcattgccaaactgtgaaaaggaatcaacaa |
327 |
Q |
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| T |
7353408 |
aatttctgcagttcaatccaagcgtctattgcggctttggatgtgatagccaaatctaaaggcactgggtccttgccaaactgtgaaaaggaatcaacaa |
7353507 |
T |
|
| Q |
328 |
tgaagaatgttgaacatttggataccgtgaacacaaaccttcatgaggtattgggtgaaaatgaaactttgaatgatgctgctattggtgcatccggttc |
427 |
Q |
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| T |
7353508 |
tgaagaatgttgaacatttggataccgtaaacacaaaccttcatgaggtattgggtgaaaatgaaactttgaatgatgctgctattggtgcatccggttc |
7353607 |
T |
|
| Q |
428 |
caatttgaacaatgcaactactactgtcatgcctgaaaagtcaagccaacaacacacgcttgcggtattatccaagctccatttgttaatgagacttatt |
527 |
Q |
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| T |
7353608 |
caatttgaacaatgcaactactgctgtcatgcctgaaaagtcaagccaacaacacatgcttgcggtattatccaagctccatttgttaatgagacttatt |
7353707 |
T |
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| Q |
528 |
gtgtgtagtataat |
541 |
Q |
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| T |
7353708 |
gtgtgtagtataat |
7353721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 176 - 417
Target Start/End: Original strand, 15493310 - 15493551
Alignment:
| Q |
176 |
ttcacttttgtttgacatttagagtaccaacaatgaaatggttggtttgcagaatttctgcagttcaatccaagcgtctattacgactttggatgtgata |
275 |
Q |
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| T |
15493310 |
ttcacctttgtttgacatttagagtagcaacaatgaaatggttggtttgaagaccttcggcaatttaatctcatcatctattgtcactttggaagggttt |
15493409 |
T |
|
| Q |
276 |
gccaaatctaaaggcaccgagtcattgccaaactgtgaaaaggaatcaacaatgaagaatgttgaacatttggataccgtgaacacaaaccttcatgagg |
375 |
Q |
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| T |
15493410 |
gccaaatctaaaggcattgggtcgtcgtcaaacattgaaaagtaaacaaatttggagaatgttgaacatttggataccgagaatgcaaacatttctgagg |
15493509 |
T |
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| Q |
376 |
tattgggtgaaaatgaaactttgaatgatgctgctattggtg |
417 |
Q |
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| T |
15493510 |
tgttatgtgaaaatgaaactttgaatggtgctactattggtg |
15493551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 31250335 - 31250380
Alignment:
| Q |
496 |
tatccaagctccatttgttaatgagacttattgtgtgtagtataat |
541 |
Q |
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| T |
31250335 |
tatccaatttccatttgttaatgagacttattgtgtgtagtataat |
31250380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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