View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17727_low_1 (Length: 771)
Name: NF17727_low_1
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 18 - 760
Target Start/End: Complemental strand, 40327334 - 40326595
Alignment:
| Q |
18 |
catggtggaactgcagcttctcagtttgttaatgacaatctattctccaatttcaagagtatgctcttaactttattacaaacatatatatcatatatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40327334 |
catggtggaactgcagcttctcagtttgttaatgacaatctattctccaatttcaagagtatgctcttaactttattacaaacatatatatcatatatta |
40327235 |
T |
|
| Q |
118 |
gaaatatggttttgctatatgatgtttttcaaatgaattgattcctagaaaaaccaagtaacttatatccaactatcaagtgcatgtttggaatcatagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40327234 |
gaaatatggttttgctatatgatgtttttcaaatcaattgattcctagaaaaaccaagtaacttatatccaactatcaagtgcatgtttggaatcatagt |
40327135 |
T |
|
| Q |
218 |
ccttttttccataatcacaagtgtcgccctaattttgacaaaaactacatatgaagctttaattatcgtgattccaaacatacacggaaacatttgtttc |
317 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40327134 |
ccttttt-ccataatcacaagtgtcgccgtaattttgacaaaaactatatatgaagctttaattatcgtgattccaaacatacacggaaatatttgtttc |
40327036 |
T |
|
| Q |
318 |
ctagagttgcaagag--tttgaccttataacctcaagggaccgggttcaaattttgtctgaaacagttgtaaaatggtcattagtaccactgtaattatt |
415 |
Q |
| |
|
||| | || ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40327035 |
cta----tccatgaggttttgcccttataacctcaagggaccgggttcaaattttgtctgaaacagttgtaaaatggccattagtaccactgtaattatt |
40326940 |
T |
|
| Q |
416 |
ggtatataaaatattggtatccttatatgatgannnnnnngtgggtaaatcaggttttacagctgaagatcaagggatttcagaaaaggttatcaaaagg |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40326939 |
ggtatataaaatattggtatccttatatgatgatttttttgtgggtaaatcaggttttacagctgaagatcaagggatttcagaaaaggttatcaaaagg |
40326840 |
T |
|
| Q |
516 |
gcattttctgcaacagatgatgattttttgtctctagtgaagaagcaatggcaaaacaaaccacagatagcatctgctggtacatgttgtttggcgggga |
615 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40326839 |
gcattttctgcaacagatgatgattttctgtctctagtgaagaagcaatggcaaaacaaaccacagatagcatctgctggtacatgttgtttggcgggga |
40326740 |
T |
|
| Q |
616 |
taatttgcaacggtaagctgtatattgcaaatgcaggagactcaagggctgtgttaggaagagtgaggaggggaacaagggaaacattagctgttcagtt |
715 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40326739 |
taatttgcaacggtatgctgtatattgcaaatgcaggagactcaagggctgtgttaggaagagtgaggaggggaacaagggaaacattagccgttcagtt |
40326640 |
T |
|
| Q |
716 |
atctacagaacacaatgttaatatagaaactgagagagatgatgt |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40326639 |
atctacagaacacaatgttaatatagaaactgagagagatgatgt |
40326595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 495 - 736
Target Start/End: Complemental strand, 28939094 - 28938853
Alignment:
| Q |
495 |
tcagaaaaggttatcaaaagggcattttctgcaacagatgatgattttttgtctctagtgaagaagcaatggcaaaacaaaccacagatagcatctgctg |
594 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||| || |||| | || || ||||| || || |||| || | ||||| || ||||| || | |
|
|
| T |
28939094 |
tcagaaaatgtgatcaaaagggcattttcagcaacagaggagagttttctatcacttgtgaataaacagtggctaagacagccacatattgcatcagcag |
28938995 |
T |
|
| Q |
595 |
gtacatgttgtttggcggggataatttgcaacggtaagctgtatattgcaaatgcaggagactcaagggctgtgttaggaagagtgaggaggggaacaag |
694 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| || | | |||||||||||| | || |||||||||| |||||||||||| | ||||| |||||| |
|
|
| T |
28938994 |
gtacttgttgtttggtggggataatttgcaatggactggtatatattgcaaattctggtgactcaagggtggtgttaggaagactagagagggcaacaag |
28938895 |
T |
|
| Q |
695 |
ggaaacattagctgttcagttatctacagaacacaatgttaa |
736 |
Q |
| |
|
|||||||| ||| | || |||||| ||||||| |||||||| |
|
|
| T |
28938894 |
ggaaacatcagccatacaattatctgcagaacataatgttaa |
28938853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 332 - 367
Target Start/End: Complemental strand, 7047129 - 7047094
Alignment:
| Q |
332 |
gtttgaccttataacctcaagggaccgggttcaaat |
367 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7047129 |
gtttgaccttataacctcaagggaccgagttcaaat |
7047094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University