View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17727_low_10 (Length: 448)
Name: NF17727_low_10
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 34860921 - 34860600
Alignment:
| Q |
1 |
taggaatttgttatcttcaccttgacttggatctttagtagttttgaagttgatatacgacatatgaacctatatattagcatatgaaaattgttgctca |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34860921 |
taggaattcgttatcttcaccttgacttggatctttagtagttttgaagttgatatacgacatatgaacctatatattagcttatgaaaattgttgctca |
34860822 |
T |
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| Q |
101 |
cttgtttgactaaaaaattctaataattttgtttttattttgatatatgatttggatctttagttatgttgaagttcatatatgacatgtgaacttatat |
200 |
Q |
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| T |
34860821 |
cttgtttgactaaaaaattctaataattttgtttttattttgatatatgatttggatctttagttatgttgaagttcatatatgacatgtgaacttatat |
34860722 |
T |
|
| Q |
201 |
tttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatatttttgtttgaaagtggattatagatttagggtgcagggaaatacatgat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34860721 |
tttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatatttttgtttgaaagtggattatagatttagcctgcagggaaatacatgat |
34860622 |
T |
|
| Q |
301 |
gaagcttatatgtgtaagttga |
322 |
Q |
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|||||||||||||||||||||| |
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| T |
34860621 |
gaagcttatatgtgtaagttga |
34860600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 346 - 433
Target Start/End: Complemental strand, 34860584 - 34860497
Alignment:
| Q |
346 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctc |
433 |
Q |
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| T |
34860584 |
aattgatctccctactcaaatacaacaaatctttttaccacttctctgaaaaagcagacttcaaagagtggtatttggaatttttctc |
34860497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 283
Target Start/End: Complemental strand, 19745778 - 19745640
Alignment:
| Q |
146 |
tatgatttggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatga |
245 |
Q |
| |
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|||||||||||| |||||||||||||||||| |||||||| || | ||||||||| | ||||| ||||| ||||| |||||||||| ||| |||||| |
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| T |
19745778 |
tatgatttggatatttagttatgttgaagtttatatatgatatattaacttatatatcgtcttatgcaaatggttgtttacttgtttgattcataaatga |
19745679 |
T |
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| Q |
246 |
taatatttttg-tttgaaagtggattatagatttagggt |
283 |
Q |
| |
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|||| || | | ||| |||| |||| ||||||||||||| |
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| T |
19745678 |
taatgttgtagttttaaaagaggatgatagatttagggt |
19745640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 432
Target Start/End: Original strand, 2242506 - 2242594
Alignment:
| Q |
346 |
aattgatctccctacttaaatacaacaaatctttttaccacttctctgaaaaagcag--acttcaaagagtggtatttggaatttttct |
432 |
Q |
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||||||||||| |||| ||||||||| |||||||| ||||||||||| | ||||||| | ||||||||||||||| || || |||||| |
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| T |
2242506 |
aattgatctccttactcaaatacaactaatcttttgaccacttctctaacaaagcagataattcaaagagtggtatgtgcaagttttct |
2242594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 2242244 - 2242318
Alignment:
| Q |
231 |
ttgactcaaaaatgataatatttttgtttgaaagtggattatagatttagggtgcagggaaatacatgatgaagc |
305 |
Q |
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||||||||||||| |||||||||||||| ||| |||| ||||||||||| || | |||||||||||||||| |
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| T |
2242244 |
ttgactcaaaaattctaatatttttgttttgaagaggatcatagatttaggatggatacaaatacatgatgaagc |
2242318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 24023073 - 24023112
Alignment:
| Q |
146 |
tatgatttggatctttagttatgttgaagttcatatatga |
185 |
Q |
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| T |
24023073 |
tatgacttggatctttatttatgttgaagttcatatatga |
24023112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 391
Target Start/End: Complemental strand, 5757427 - 5757387
Alignment:
| Q |
352 |
tctccctacttaaatacaacaaatct-ttttaccacttctc |
391 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||| |
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| T |
5757427 |
tctccctactcaaatacaacaaatcttttttaccacttctc |
5757387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 36341389 - 36341437
Alignment:
| Q |
59 |
gacatatgaacctatatattagcatatgaaaattgttgctcacttgttt |
107 |
Q |
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||||||||||| ||| ||||||| |||| ||||||||| |||||||||| |
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| T |
36341389 |
gacatatgaacttatgtattagcttatgtaaattgttgttcacttgttt |
36341437 |
T |
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