View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17727_low_11 (Length: 401)
Name: NF17727_low_11
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 35026361 - 35025993
Alignment:
| Q |
18 |
gggaagaccatcaatgtgaggaacactgagagggtaaaaagtgatgaggtttgggttaaggttgagatgttgtaacttggtttgtattttttgggggatg |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
35026361 |
gggaagaccatcaatgtgaggaacattgagagggtaaaaagtgatgagatttgggtttaggttgagatgttgtaacttggtttgtgtttttttggggatg |
35026262 |
T |
|
| Q |
118 |
aagaatgatattttgtgaccnnnnnnngctaatttattggagaggtgaagatatggggtgaagtgtcccatagcaaaccatggaaacattgctatgtgca |
217 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35026261 |
aagaatgatattttgtgacctttttttgctaatttgttggagaggtgaagatatggggtgaagtgtcccatagcaaaccatggaaacattgctatgtgca |
35026162 |
T |
|
| Q |
218 |
aaggaggaagagatcccatggttgatacaagaatgtaatgaactagggacaaagctatataaat-tatatatgtagatgtgtgtgtgtataagttcaatt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| |
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| T |
35026161 |
aaggaggaagagatcccatggttgatacaagaatgtaatgaactagggacaaagctatacaaatatatatatgtagatgtgtgtgtgtgtaagttcaatt |
35026062 |
T |
|
| Q |
317 |
atattctatgatttttgaaa-tttgatgtgtaatgttgttctaccaaaataaaaattgatgtataatgt |
384 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35026061 |
atattctatgatttttgaaattttgatgtgtaaggttgttctaccaaaataaaaattgatgtataatgt |
35025993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 35036832 - 35037038
Alignment:
| Q |
14 |
caaagggaagaccatcaatgtgaggaacactgagagggtaaaaagtgatgaggtttgggttaaggttgagatgttgtaacttggtttgtattttttgggg |
113 |
Q |
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|||| |||||||||| ||||||||||||| |||||||||||||||||||||| ||||| | |||||||| |||| ||| ||||||||| |||| ||| |
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| T |
35036832 |
caaatggaagaccatgaatgtgaggaacattgagagggtaaaaagtgatgagatttggataaaggttgaattgttctaatttggtttgtgttttcgtggg |
35036931 |
T |
|
| Q |
114 |
gatgaagaatgatattttgtgaccnnnnnnngctaatttattggagaggtgaagatatggggtgaagtgtcccatagcaaaccatggaaacattgctatg |
213 |
Q |
| |
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|||||||| || |||||||| || |||||||| || ||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||| |
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| T |
35036932 |
aatgaagaaagagattttgtgtccccttttggctaatttgtttgagagatgaagatatggagttaagtgtcccattgcaaaccatggaaacattgctatg |
35037031 |
T |
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| Q |
214 |
tgcaaag |
220 |
Q |
| |
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||||||| |
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| T |
35037032 |
tgcaaag |
35037038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 35009101 - 35008895
Alignment:
| Q |
14 |
caaagggaagaccatcaatgtgaggaacactgagagggtaaaaagtgatgaggtttgggttaaggttgagatgttgtaacttggtttgtattttttgggg |
113 |
Q |
| |
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|||| |||||||||| ||| ||||||||| ||||||||||||||||||| | ||||| | |||||||| |||| ||| ||||||||| |||| | ||| |
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| T |
35009101 |
caaatggaagaccatgaatatgaggaacattgagagggtaaaaagtgattaaatttggataaaggttgaattgttctaatttggtttgtgttttcttggg |
35009002 |
T |
|
| Q |
114 |
gatgaagaatgatattttgtgaccnnnnnnngctaatttattggagaggtgaagatatggggtgaagtgtcccatagcaaaccatggaaacattgctatg |
213 |
Q |
| |
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|||||||| || |||||||| || |||||||| || ||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||| |
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| T |
35009001 |
aatgaagaaagagattttgtgtccccttttggctaatttgtttgagagatgaagatatggagttaagtgtcccattgcaaaccatggaaacattgctatg |
35008902 |
T |
|
| Q |
214 |
tgcaaag |
220 |
Q |
| |
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||||||| |
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|
| T |
35008901 |
tgcaaag |
35008895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 35019306 - 35019495
Alignment:
| Q |
34 |
tgaggaacactgagagggtaaaaagtgatgaggtttgggttaaggttgagatgttgtaacttggtttgtattttttgggggatgaagaatgatattttgt |
133 |
Q |
| |
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|||||||| ||| |||| |||| || || || ||||| | ||| |||||||||||||||||| | || | |||| ||||||||||| |||||||||| |
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| T |
35019306 |
tgaggaactgtgatagggaaaaacgtaataagatttggatgaagattgagatgttgtaacttgttgagtgtgtttttagggatgaagaacgatattttgt |
35019405 |
T |
|
| Q |
134 |
gaccnnnnnnngctaatttattggagaggtgaagatatggggtgaagtgtcccatagcaaaccatggaaacattgctatgtgcaaaggag |
223 |
Q |
| |
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|||| |||||||| ||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35019406 |
gacctcttattgctaatttgttggagaagtgaagatatggagttaagtgtcccatagcaaaccatggaaacattgctatgtgcaaaggag |
35019495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 36288653 - 36288447
Alignment:
| Q |
14 |
caaagggaagaccatcaatgtgaggaacactgagagggtaaaaagtgatgaggtttgggttaaggttgagatgttgtaacttggtttgtattttttgggg |
113 |
Q |
| |
|
||||||| || || ||||||||||||||| ||||||||||||| ||||| |||||||||| |||||||| | || ||||||||||||| |||| | ||| |
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| T |
36288653 |
caaagggtaggccttcaatgtgaggaacattgagagggtaaaaggtgataaggtttgggtaaaggttgaatttttctaacttggtttgtgttttcttggg |
36288554 |
T |
|
| Q |
114 |
gatgaagaatgatattttgtgaccnnnnnnngctaatttattggagaggtgaagatatggggtgaagtgtcccatagcaaaccatggaaacattgctatg |
213 |
Q |
| |
|
||||||||| || |||||| || |||||| | || ||||||||||||||||| | | ||||||||| |||||||||||| ||||||||||| |
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| T |
36288553 |
gatgaagaaagaggttttgtctccctttttggctaatatgtttgagaggtgaagatatggaattaggtgtcccattgcaaaccatggagacattgctatg |
36288454 |
T |
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| Q |
214 |
tgcaaag |
220 |
Q |
| |
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||||||| |
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| T |
36288453 |
tgcaaag |
36288447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 35033369 - 35033163
Alignment:
| Q |
19 |
ggaagaccatcaatgtgaggaacactgagagggtaaaaagtgatgaggtttgggttaaggttgagatgttgtaacttggtttgtattttttgggggatga |
118 |
Q |
| |
|
|||||||||| || |||||||| ||| |||| |||| || || || ||||| | ||| ||||||| |||||||||| | || | |||| || |||| |
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| T |
35033369 |
ggaagaccattaacatgaggaactgtgatagggaaaaaggtaataagatttggataaagattgagatattgtaacttgttgagtgtgtttttaggtatga |
35033270 |
T |
|
| Q |
119 |
agaatgatattttgtgaccnnnnnnngctaatttattggagaggtgaagatatggggtgaagtgtcccatagcaaaccatggaaacattgctatgtgcaa |
218 |
Q |
| |
|
|||||||||||||||| || ||||| || || ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || |
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|
| T |
35033269 |
agaatgatattttgtgtcctcttaatgctaacttgtttgagaggtgaagatatggagttaagtgtcccatagcaaaccatggaaacattgctatgtgtaa |
35033170 |
T |
|
| Q |
219 |
aggagga |
225 |
Q |
| |
|
||||||| |
|
|
| T |
35033169 |
aggagga |
35033163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 34 - 229
Target Start/End: Original strand, 35012280 - 35012475
Alignment:
| Q |
34 |
tgaggaacactgagagggtaaaaagtgatgaggtttgggttaaggttgagatgttgtaacttggtttgtattttttgggggatgaagaatgatattttgt |
133 |
Q |
| |
|
|||||||| ||| |||| |||| || || || ||||| | ||| ||||||||||| |||||| | || | |||| ||||||||||| |||||||||| |
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| T |
35012280 |
tgaggaactgtgatagggaaaaatgtaataagatttggatgaagattgagatgttgcaacttgttgagtgtgtttttagggatgaagaacgatattttgt |
35012379 |
T |
|
| Q |
134 |
gaccnnnnnnngctaatttattggagaggtgaagatatggggtgaagtgtcccatagcaaaccatggaaacattgctatgtgcaaaggaggaagag |
229 |
Q |
| |
|
|||| |||||||| || |||| ||| |||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||||||||| |
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|
| T |
35012380 |
gacctcttattgctaatttgtttgagaagtggagatatggggtgaaatgtcccatagcaaaccatggaaacattgatatatgcataggaggaagag |
35012475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 34998837 - 34998980
Alignment:
| Q |
79 |
ttgagatgttgtaacttggtttgtattttttgggggatgaagaatgatattttgtgaccnnnnnnngctaatttattggagaggtgaagatatggggtga |
178 |
Q |
| |
|
|||||||||||||||||| | || | |||| |||||||| |||||||||||||||||| ||||||| || |||||| | | | |||| || |
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| T |
34998837 |
ttgagatgttgtaacttgttgagtgtgtttttggggatgatgaatgatattttgtgacctcttattactaatttgttagagaggcggataaatggagttg |
34998936 |
T |
|
| Q |
179 |
agtgtcccatagcaaaccatggaaacattgctatgtgcaaagga |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34998937 |
agtgtcccatagcaaaccatggaaacattgctatgtgcaaagga |
34998980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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