View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17727_low_12 (Length: 364)
Name: NF17727_low_12
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 23 - 353
Target Start/End: Original strand, 37599879 - 37600207
Alignment:
| Q |
23 |
aaaattgcacaactgcgacaacaagatttnnnnnnnnnt-tatcatacaggaggccaaagtacgaactaaatggaaatttatatttcaagaaccaaaagg |
121 |
Q |
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| T |
37599879 |
aaaattgcacaactgcgacaacaagatttaaaaaaaaaaatatcatacaggaggccaaagtgcgaactaaatggaaatttatatttcaagaaccaaaagg |
37599978 |
T |
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| Q |
122 |
tttattcagacataactgcaaaatttgttgcaaaaaa-caacataatatattaaggaacacaaccacaatggagaagaggcacaattattttttctaatg |
220 |
Q |
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| T |
37599979 |
tttattcagacataactgcaaaatttgttgcaaaaaaacaacataat----taaggaacacaaccacaatggagaagaggcacaattattttttctaatg |
37600074 |
T |
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| Q |
221 |
gcaatcgaaggatatcactagcaaaacgctacgacacataaactcctctgaaacactcatacaaacccttagtacacctaaattgttcaaaacaagtata |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37600075 |
gcaatcgaaggatatcactagcaaaacgctacgacacataaactccactgaaacactcatacaaacccttagtacgcctaaattgttcaaaacaagtata |
37600174 |
T |
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| Q |
321 |
tgaactacatatcacaacattatagaagagcat |
353 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
37600175 |
tgaactacatatcacaacattatagaagagcat |
37600207 |
T |
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