View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17727_low_13 (Length: 359)
Name: NF17727_low_13
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 30 - 341
Target Start/End: Complemental strand, 9023675 - 9023364
Alignment:
| Q |
30 |
acaaaccaaccttaagagaatgatgaggataataaattccagcatgaacaacttcactgtttcttgaactagttccagtaccaaaactaggtgctgattc |
129 |
Q |
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| T |
9023675 |
acaaaccaaccttaagagaatgatgaggataataaattccagcatgaacaacttcactgtttcttgaactagttccagtaccaaaactaggtgctgattc |
9023576 |
T |
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| Q |
130 |
aatgacaattacctctctacccttcaatgccaatgctcttgcaactgctattccaatcacaccagctcctatcactatacagtccactctctctcttggg |
229 |
Q |
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| T |
9023575 |
aatgacaattacctctctacccttcaatgccaatgctcttgccactgctattccaaccacaccagctcctatcactacacagtccactctctctcttggg |
9023476 |
T |
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| Q |
230 |
acactgtacgaggttgttgtctcccttgagacagggtacgaggttgttgtatttgtgtcattttgggtggtacttctaatgtttctgacccaattgttaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9023475 |
acactgtacgaggttgttgtctcccttgagacagggtacgaggttgttgtatttgtgtcattttgggtggtacttctaatgtttctgacccaattgttaa |
9023376 |
T |
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| Q |
330 |
aagggttgttcc |
341 |
Q |
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| T |
9023375 |
aagggttgttcc |
9023364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 8952790 - 8952853
Alignment:
| Q |
34 |
accaaccttaagagaatgatgaggataataaattccagcatgaacaacttcactgtttcttgaa |
97 |
Q |
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| T |
8952790 |
accaaccttaaaagaataccgaggataataaataccagcatgaacaacttcattgtttcttgaa |
8952853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 8954335 - 8954383
Alignment:
| Q |
37 |
aaccttaagagaatgatgaggataataaattccagcatgaacaacttca |
85 |
Q |
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| T |
8954335 |
aacctcaaaagaatgatgaggataataaattctagcatgaacaacttca |
8954383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 8966378 - 8966330
Alignment:
| Q |
37 |
aaccttaagagaatgatgaggataataaattccagcatgaacaacttca |
85 |
Q |
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||||| || ||||||||||||||||||||||| |||||||||||||||| |
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| T |
8966378 |
aacctcaaaagaatgatgaggataataaattctagcatgaacaacttca |
8966330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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