View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17727_low_15 (Length: 320)
Name: NF17727_low_15
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 25450628 - 25450871
Alignment:
| Q |
9 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
108 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25450628 |
gacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgt |
25450727 |
T |
|
| Q |
109 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
208 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25450728 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
25450827 |
T |
|
| Q |
209 |
acagccgtgtgtaaaatacagcagaaatatattagcctttgtta |
252 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25450828 |
acagccgtgtgtaaaatatagcagaaatatattagcctttgtta |
25450871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 25446065 - 25446308
Alignment:
| Q |
9 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
108 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
25446065 |
gacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatcaattgtcattagtcagtacaattgacttaccttattcatgt |
25446164 |
T |
|
| Q |
109 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25446165 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
25446264 |
T |
|
| Q |
209 |
acagccgtgtgtaaaatacagcagaaatatattagcctttgtta |
252 |
Q |
| |
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||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
25446265 |
acaaccgtgtgtaaaatatagcagaaatatattagcctttgtta |
25446308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 2607085 - 2606833
Alignment:
| Q |
9 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||| |
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| T |
2607085 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaattgtcattagttagtacaattgacttaccttattcatgt |
2606986 |
T |
|
| Q |
109 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2606985 |
acaattgttttgctctactgtaattccaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacatctataaagccttgt |
2606886 |
T |
|
| Q |
209 |
acagccgtgtgtaaa--atacagcagaaatatattagcctttgttattttata |
259 |
Q |
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|
|||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
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|
| T |
2606885 |
acagccatgtgtaaaatatatagcagaaatatattagcctttgttattttata |
2606833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 31137831 - 31137784
Alignment:
| Q |
260 |
gactttgctaatttggagctcaataccacattctttagtgatgatgtc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31137831 |
gactttgctaatttggagctcaataccacattctttagtgattatgtc |
31137784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 31901369 - 31901621
Alignment:
| Q |
9 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||||||| |
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| T |
31901369 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttatgatcaactgtcattagtcagtaaagttgacttaccttattcatgt |
31901468 |
T |
|
| Q |
109 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31901469 |
acaattgttttgctctactgtaattcccattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
31901568 |
T |
|
| Q |
209 |
acagccgtgtgtaaa--atacagcagaaatatattagcctttgttattttata |
259 |
Q |
| |
|
||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |
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|
| T |
31901569 |
acagccgtgtgtaaaagatatagcataaatatattagcctttgttattttata |
31901621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 31925239 - 31925485
Alignment:
| Q |
12 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgtaca |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
31925239 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacagttgacttaccttattcatgtaca |
31925338 |
T |
|
| Q |
112 |
attgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgtaca |
211 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
31925339 |
attgttttgctctactgtaattccaa-tcaataaatttaattattatgtaaatgcatttgattaccttgtaaagcttggacaactataaagccttgtaca |
31925437 |
T |
|
| Q |
212 |
gccgtgtgtaaa--atacagcagaaatatattagcctttgttatttta |
257 |
Q |
| |
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||||||||||| ||| |||| ||||||||||||||||||||||||| |
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|
| T |
31925438 |
accgtgtgtaaaagatatagcataaatatattagcctttgttatttta |
31925485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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