View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17727_low_17 (Length: 293)
Name: NF17727_low_17
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 12 - 275
Target Start/End: Original strand, 40944013 - 40944276
Alignment:
| Q |
12 |
acagaagaaaatatatggttctgatgcttattctgcttgttttacagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttc |
111 |
Q |
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| T |
40944013 |
acagaagaaaataaatggttctgatgcttattctgcttgtttttcagatttttgaatgctggaatatttggaaaaggaagtgagtcaagccacacacttc |
40944112 |
T |
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| Q |
112 |
cacacacagcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatct |
211 |
Q |
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| T |
40944113 |
cacacacagcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatct |
40944212 |
T |
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| Q |
212 |
ccttaacaacaacgtcactccatgtttaccacttcgcggtacaatcacagcttcaggagatttg |
275 |
Q |
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| T |
40944213 |
ccttaacaacaacgtcactccatgtttaccacttcgcggtacaatcacagcttcaggagatttg |
40944276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 47 - 275
Target Start/End: Original strand, 40958013 - 40958241
Alignment:
| Q |
47 |
cttgttttacagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgaga |
146 |
Q |
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| T |
40958013 |
cttgttttccaggtttttgaatgcaggaatattcggaaatggaacagagtcaaatcacacactaccacacacggcaacaagagcagccatgctagtgaga |
40958112 |
T |
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| Q |
147 |
atcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttaccacttc |
246 |
Q |
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| T |
40958113 |
atcaacacactcctccaaggctattcaggaattagatttgaaatcttggaagccatcactaagctccttaacaacaacgtcactccatgtttaccacttc |
40958212 |
T |
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| Q |
247 |
gcggtacaatcacagcttcaggagatttg |
275 |
Q |
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| T |
40958213 |
gcggtacaatcacagcttcaggagatttg |
40958241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 265
Target Start/End: Complemental strand, 28185358 - 28185153
Alignment:
| Q |
60 |
tttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgagaatcaacacactcc |
159 |
Q |
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| T |
28185358 |
tttttgaatgccggaatatttggcaatggtacagaatcaaattgtacactaccacatacagcaacaagagctgcaatgcttgtgaggatcaacactcttc |
28185259 |
T |
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| Q |
160 |
tccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttaccacttcgcggtacaatcac |
259 |
Q |
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| T |
28185258 |
ttcaagggtattctggtattagatttgaaatcttggaagctatcacaaagctcttgaacaacaatattaccccatgtttaccacttcgcggtacaatcac |
28185159 |
T |
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| Q |
260 |
agcttc |
265 |
Q |
| |
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|||||| |
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| T |
28185158 |
agcttc |
28185153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 42610688 - 42610605
Alignment:
| Q |
116 |
cacagcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagc |
199 |
Q |
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| T |
42610688 |
cacagccacaagagcaggcatgttggttagaatcaacacattgcttcaaggatattcaggaatcagatttgaaatcatggaagc |
42610605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 241
Target Start/End: Original strand, 40548770 - 40548956
Alignment:
| Q |
55 |
acagatttttgaatgctggaatatttggaaacggaactgagtcaagccacacacttccacacacagcaacaagagctgccatgctagtgagaatcaacac |
154 |
Q |
| |
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|||| ||||||||||||||||| ||||| || ||||| || | |||| ||| | ||||| | |||||||||||||| ||| |||| ||||||||||| |
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| T |
40548770 |
acaggtttttgaatgctggaatttttggtaatggaacagaacaatgccatacattgccacaaaatgcaacaagagctgcaatgttagtaagaatcaacac |
40548869 |
T |
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| Q |
155 |
actcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctccttaacaacaacgtcactccatgtttacc |
241 |
Q |
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| T |
40548870 |
actccttcaaggctactcaggaatcagatatgaaatgctagaagccattacaaaacttctcaaccacaacattacaccatgtttacc |
40548956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 43215871 - 43215965
Alignment:
| Q |
120 |
gcaacaagagctgccatgctagtgagaatcaacacactcctccaaggttattcaggaatcagatttgaaatcttggaagccatcaccaatctcct |
214 |
Q |
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||||||||||| || ||||| ||||| | || || || || ||||| |||||||| || |||||||||||||| ||||| |||||||| ||||| |
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| T |
43215871 |
gcaacaagagcagctatgcttgtgagggttaatacccttctacaaggctattcaggcattagatttgaaatcttagaagctatcaccaagctcct |
43215965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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