View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17727_low_19 (Length: 271)

Name: NF17727_low_19
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17727_low_19
NF17727_low_19
[»] chr1 (3 HSPs)
chr1 (18-255)||(19569886-19570109)
chr1 (125-222)||(30490036-30490133)
chr1 (171-219)||(14106691-14106739)
[»] chr7 (3 HSPs)
chr7 (175-222)||(20443714-20443761)
chr7 (175-222)||(32759949-32759996)
chr7 (175-222)||(30821387-30821434)
[»] chr6 (1 HSPs)
chr6 (185-223)||(20725407-20725445)
[»] chr2 (2 HSPs)
chr2 (171-225)||(29717065-29717119)
chr2 (183-224)||(7819730-7819771)
[»] chr8 (1 HSPs)
chr8 (125-222)||(15542593-15542690)
[»] chr4 (1 HSPs)
chr4 (175-220)||(19444434-19444479)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 19570109 - 19569886
Alignment:
Q  18 gcatttggtatttctaaggaagccaatagatatgttatgtgttggctatcgtggattgtgcggtaggttagggatgacaattagacttgagaccgttggg 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19570109 gcatttggtatttctaaggaagcgaatagatatgttatgtgttggctatcgtggattgtgcggtaggttagggatgacaattagacttgagaccgttggg 19570010  T
Q  118 cacctggaaaaatacccacaatagataggttaaataccgcatctacgagtctaggcttgggctcgggtaattacccacaaatttgaatggggatgggtgc 217  Q
    ||||||||||||||||||||||| |||||||||              ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19570009 cacctggaaaaatacccacaataaataggttaa--------------agtctaggcttgggctcgggtaaatacccacaaatttgaatggggatgggtgc 19569924  T
Q  218 gggtatgacatttcaatatccaacccgaccctatcctt 255  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  19569923 gggtatggcatttcaatatccaacccgcccctatcctt 19569886  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 30490133 - 30490036
Alignment:
Q  125 aaaaatacccacaatagataggttaaataccgcatctacgagtctaggcttgggctcgggtaattacccacaaatttgaatggggatgggtgcgggta 222  Q
    ||||||||||||||||| |||| ||||  |||| | || | || | ||||||||  ||||||||||||| |||||||  ||||| |||| ||||||||    
T  30490133 aaaaatacccacaataggtagggtaaaccccgcttttatgggtatgggcttgggtccgggtaattacccgcaaatttagatgggtatggatgcgggta 30490036  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 14106739 - 14106691
Alignment:
Q  171 ggcttgggctcgggtaattacccacaaatttgaatggggatgggtgcgg 219  Q
    ||||||||  ||||||||||||| ||||||| |||||| ||||||||||    
T  14106739 ggcttgggtccgggtaattacccgcaaattttaatgggtatgggtgcgg 14106691  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 20443761 - 20443714
Alignment:
Q  175 tgggctcgggtaattacccacaaatttgaatggggatgggtgcgggta 222  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  20443761 tgggcacgggtaattacccacaaatttgaacgggtatgggtgcgggta 20443714  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 32759949 - 32759996
Alignment:
Q  175 tgggctcgggtaattacccacaaatttgaatggggatgggtgcgggta 222  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  32759949 tgggcacgggtaattacccacaaatttgaacgggtatgggtgcgggta 32759996  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 30821387 - 30821434
Alignment:
Q  175 tgggctcgggtaattacccacaaatttgaatggggatgggtgcgggta 222  Q
    ||||| ||||||| |||||||||||||||| ||| |||||||||||||    
T  30821387 tgggcacgggtaactacccacaaatttgaacgggtatgggtgcgggta 30821434  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 20725445 - 20725407
Alignment:
Q  185 taattacccacaaatttgaatggggatgggtgcgggtat 223  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  20725445 taattacccacaaatttgaacgggtatgggtgcgggtat 20725407  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 29717065 - 29717119
Alignment:
Q  171 ggcttgggctcgggtaattacccacaaatttgaatggggatgggtgcgggtatga 225  Q
    |||||||||||| ||||||||||| ||||||||||||| ||  ||||| ||||||    
T  29717065 ggcttgggctcgagtaattacccataaatttgaatgggtatttgtgcgagtatga 29717119  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 7819771 - 7819730
Alignment:
Q  183 ggtaattacccacaaatttgaatggggatgggtgcgggtatg 224  Q
    ||||||||||  |||||||||||||| |||||||||||||||    
T  7819771 ggtaattacctgcaaatttgaatgggtatgggtgcgggtatg 7819730  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 15542690 - 15542593
Alignment:
Q  125 aaaaatacccacaatagataggttaaataccgcatctacgagtctaggcttgggctcgggtaattacccacaaatttgaatggggatgggtgcgggta 222  Q
    |||||||||| |||||||||||| |||  |||| | || | || | | ||||||  ||||||||||||| |||||||  ||||| |||||||||||||    
T  15542690 aaaaatacccgcaatagataggtaaaaccccgcttttatgggtatggccttgggtccgggtaattacccgcaaatttagatgggtatgggtgcgggta 15542593  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 19444434 - 19444479
Alignment:
Q  175 tgggctcgggtaattacccacaaatttgaatggggatgggtgcggg 220  Q
    ||||| ||| |||||||||||||||||||||||| ||| |||||||    
T  19444434 tgggcacggataattacccacaaatttgaatgggtatgagtgcggg 19444479  T

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