View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17727_low_21 (Length: 267)
Name: NF17727_low_21
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 10418029 - 10418299
Alignment:
| Q |
1 |
atattataggaacaaaccatataatataattgatccaattggactgaggaagatggttagttgggttgagatcttcac-----------aaaacggtgac |
89 |
Q |
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| T |
10418029 |
atattataggaacaaaccatataatataattgatccaattggaccgaggaagatggttggttgggttcagatcttcacaaaaaagtcacaaaacggtgac |
10418128 |
T |
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| Q |
90 |
ttgacctacaagtcacatgcgcctagcgcctatacccatttgccaagcgcatgtgcctggtatgttaggcgcctggtgcctcatttcatgcgcttgggcg |
189 |
Q |
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| T |
10418129 |
ttgacctacaagtcacaggcgctaagcgcctatacccattcgccaggcgcatgtgcctggtatgttaggcgcctggtgcctcctttcatgcgcttgggcg |
10418228 |
T |
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| Q |
190 |
cctttggatgccccgttctgtacacctagtcgcttgtgactgcgttctgtgctgaaatgtctattttcttcg |
261 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10418229 |
cctttggacgccccgttctgta-gcctagtcgcttgtgactgcgttctgtgctgaaatgtctattttcttcg |
10418299 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 22470923 - 22470850
Alignment:
| Q |
108 |
gcgcctagcgcctatacccatttgccaagcgcatgtgcctggtatgttaggcgcctggtgcctcatttcatgcg |
181 |
Q |
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||||| ||||||||||||||| |||| |||||||| |||| || || |||||||||| ||| |||| |||||| |
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| T |
22470923 |
gcgccaagcgcctatacccatgcgccatgcgcatgtacctgctaagtcaggcgcctggcgccccattccatgcg |
22470850 |
T |
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