View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17727_low_3 (Length: 630)
Name: NF17727_low_3
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 4 - 599
Target Start/End: Complemental strand, 37203995 - 37203401
Alignment:
| Q |
4 |
ggacatcatctatttgtagcaccataaatgttgcatttaatccaatgatttaaaggaggccgccatacaacttctttaatcctaggcacaataggaggat |
103 |
Q |
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| T |
37203995 |
ggacatcatctatttgtagcaccataaatgttgcatttaatccaatcatttaaaggaggccgccataaaacttctttaatcctaggcacaataggaggat |
37203896 |
T |
|
| Q |
104 |
gaatgttcgtcggtcgagaaggccttcaaaatatggacacccttaatagaggatgtggtagttgttagagcaagaattattgtcacacatcatcgtatta |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
37203895 |
gaatgttcgtcggtcgagaaggccttcaaaatatggacacccttaatagaggatgtggtagttgttagagcaggtattattgtcacacatcatcgtatta |
37203796 |
T |
|
| Q |
204 |
caaattttacggcaatttaatatctcgattattcttctcaaccacactacttggcaaacacacgatgcagcaattgtaaattctgcttcagtggtagaaa |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37203795 |
caaattttacggcaatttaatatctcgattattcttctcaaccacgctacttggcaaacacacgatgcagcaactgtaaattctgcttcagtggtagaaa |
37203696 |
T |
|
| Q |
304 |
gtgtaactatatgttgcttctaagttgaccaggaaatgccagctgacacattatttgatgtgttctttttatcatcaacatcatcgttataatcactatc |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37203695 |
gtgtaactatatgttgcttctaagttgaccaggaaatgacagctgacacattatttgatgtgttctttttatcatcaacatcatcgttataatcactatc |
37203596 |
T |
|
| Q |
404 |
agcgtatgttattaattcatcagcttcactcttttttgtaccaaataccaactttcacagtacactcaagtatctcatgatcttcttgataacttgcaag |
503 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37203595 |
agtgtatgttattaattcatcagcttcactct-ttttgtaccaaataccaactttcacagtacactcaagtatctcatgatcttcttgataacttgcaag |
37203497 |
T |
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| Q |
504 |
tgtttcgtaattggcttttccatgtacttgttgatcaagcatactgaaaacgttaagtcatgtatggttggagtcaaatacattagattccagcta |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37203496 |
tgtttcgtaattggcttttccatgtacttgttgatcaagcatactgaaaacgttaagtcatgtatggttggagtcaaatacattagattccagcta |
37203401 |
T |
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