View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17727_low_4 (Length: 599)
Name: NF17727_low_4
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 9 - 585
Target Start/End: Complemental strand, 50467569 - 50466984
Alignment:
| Q |
9 |
cagagattggtgcgaataaaagacctatagtttggactgtttcttggaacttcttcctgctatgaattcctgcattttcttgaattgctccttcgtcatt |
108 |
Q |
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| T |
50467569 |
cagagattggtgcgaataaaagacctatagtttggactgtttcttggaacttcttcctgctatgaattcctgcattttcttgaattgctccttcgtcatt |
50467470 |
T |
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| Q |
109 |
ccattataataggcatggcccctctcctaaatttcgtacacaggtagattactcaatcaaaattacatgaaaaatagtctgaactgtgcagctcaaagct |
208 |
Q |
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| T |
50467469 |
ccattataataggcatggcccctctcctaaatttcgtacacaggtagataactccatcaaaattacataaaaaatagtctgaactgtgcagctcaaagct |
50467370 |
T |
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| Q |
209 |
taagatgcaaatataaggatgaagatatatgcaaaggattactgacacagaacaaaaaatgtaactgataatgactagactcgtgcgaaataattttcca |
308 |
Q |
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| T |
50467369 |
taagatgcaaatataaggatgaagatatatgcaaagaattactgacacagaacaaaaaatgtaactgataatgaatagactcgtgcaaaataattttcca |
50467270 |
T |
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| Q |
309 |
acgttttccaacaatgctaaataac---------taactacagtatttacagctgcaaaatacagagtgaattttagatagtgaaattttgctctaagct |
399 |
Q |
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| T |
50467269 |
acgttttccaacaatgctaaataactagtgtttttaactacagtatttacagctgcaaaatacagagtgaattttagatagtgaaattttgctctaagct |
50467170 |
T |
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| Q |
400 |
ccctttatttctatcaactatactaagttaagtgcaaatatatttgcctaaattacaattataaagttcacaaaatgataggaatgattaatggctttat |
499 |
Q |
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| T |
50467169 |
ccctttatttctatcaactatactaagttaagtgcaaatctatttgcctaaattacaattgtaaagttcacaaaatgataggaatgattaatggctttat |
50467070 |
T |
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| Q |
500 |
ggctgcaccctgtacataatttgctgagaaattgaatccgtattatgtaatgatatgcataattgactccatattatgtagttttt |
585 |
Q |
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| T |
50467069 |
ggctgcaccctgtacataatttgctgagaaattgaatccgtattatgtaatgatatgcataattgactccatattatgtagttttt |
50466984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 47393892 - 47394013
Alignment:
| Q |
23 |
aataaaagacctatagtttggactgtttcttggaacttcttcctgctatgaattcctgcattttcttgaattgctccttcgtcattccattataataggc |
122 |
Q |
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| T |
47393892 |
aataaaagacctatagtttcgactgattcttggaacttc---ctgctatgaattcctgcattttcttgaattgctccttcgtcattccattataataggc |
47393988 |
T |
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| Q |
123 |
atggcccctctcctaaatttcgtac |
147 |
Q |
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| T |
47393989 |
atgacccctctcctaaatttcgtac |
47394013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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