View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17727_low_5 (Length: 552)
Name: NF17727_low_5
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_low_5 |
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| [»] chr6 (9 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Complemental strand, 1898807 - 1898276
Alignment:
| Q |
1 |
atgcctataaactttccaaaaatagcctagaaaaagagacgtgtcatcaatgaagtacacaaccttaagaggtttaaatatcttataaatgatatttcca |
100 |
Q |
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| T |
1898807 |
atgcctataaactttccaaaaatagcctagaaaaagagacgtgtcatcaatgaagtacacaaccttaagaggtttaaatattttataaatgatatttcaa |
1898708 |
T |
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| Q |
101 |
gtttcaacaaataatttgacatcaaaagcataaaactactaagatggttaacacaattcaaatatgtgcttcattacgtcccgtgactgctttatcaagt |
200 |
Q |
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| T |
1898707 |
gtttcaacaaacaatttgacatcaaaagcataaaactactaagatggttaacacaattcaaatatgtgcttaattacgtcccgtgactgatttatcaagt |
1898608 |
T |
|
| Q |
201 |
gttgcaacttattaatcgttcactcaaacgcaattaaccacaaatttgttaacttcggtttacaagggtatataggaacttaaattatgattaatgaata |
300 |
Q |
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| T |
1898607 |
gtcgcatcttattaatcgttcactc-aacccaattaaccacaaatttgttaacttcggtttacaaaagtatattggaacttaaactatgattaatgaata |
1898509 |
T |
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| Q |
301 |
ccatttatatttgaacacaatttaaatagttaatcagtctatttatatttgaacactatagtagaggttgacgaagttcaaagtcgtggttaaccagata |
400 |
Q |
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| T |
1898508 |
ccatttatatttgaacacaatttaaatagttaatcggtctatttatatttgaacactatagtagaggttgacgaagttcaaagtcgtggttaaccagata |
1898409 |
T |
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| Q |
401 |
attgaattgagttaaccatctaagttgatgttaaattttgatatcaaatttgtgcgtcaaaataacacaactcaaattttttggtcagtgtagcagtagt |
500 |
Q |
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| T |
1898408 |
attg-------------------gttaatgttaaattttgatatcaaatttgtgcttcaaaataacacaactcaaattttttggtcagtgtagaagtagt |
1898328 |
T |
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| Q |
501 |
tttgcgagtatcttacagaagaaacaatggagataagtgagagattcagtcc |
552 |
Q |
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| T |
1898327 |
tttgcgagtatcttacagaagaaacaatggagataagtgagagattcagtcc |
1898276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 422 - 552
Target Start/End: Complemental strand, 1913781 - 1913651
Alignment:
| Q |
422 |
aagttgatgttaaattttgatatcaaatttgtgcgtcaaaataacacaactcaaattttttggtcagtgtagcagtagttttgc-gagtatcttacagaa |
520 |
Q |
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| T |
1913781 |
aagtttatgttgaatattgatatcaaacttgtgagtcaaa-taacacaactcaaatatttgtcaaagtgtagcagtagttttgcagtgtatcttacagaa |
1913683 |
T |
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| Q |
521 |
gaaacaatggagataagtgagagattcagtcc |
552 |
Q |
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| T |
1913682 |
gaaacaatggagataagtgagagatttagtcc |
1913651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 151 - 319
Target Start/End: Complemental strand, 1903876 - 1903702
Alignment:
| Q |
151 |
acacaattcaaatatgtgcttcattacgtcccgtgactgctttatcaagtgttgcaacttattaatcgttcactcaaacgcaattaaccacaaatttg-- |
248 |
Q |
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|||||||||||||| ||| || ||||||||| ||||||| ||| |||||||| ||||| ||| ||||| ||||| | ||||||||||||||||||| |
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| T |
1903876 |
acacaattcaaataagtgtttaattacgtccagtgactgatttgtcaagtgtcacaactcattcatcgtccactcgat-gcaattaaccacaaatttgaa |
1903778 |
T |
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| Q |
249 |
-----ttaacttcggtttacaagggtatataggaacttaaattatgattaatgaataccatttatatttgaacaca |
319 |
Q |
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| T |
1903777 |
tatcgttaaccatgattttcaagtgtatattggaactcaaattatgattaatgaatatcatttatatttgaacaca |
1903702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 151 - 319
Target Start/End: Complemental strand, 1908109 - 1907935
Alignment:
| Q |
151 |
acacaattcaaatatgtgcttcattacgtcccgtgactgctttatcaagtgttgcaacttattaatcgttcactcaaacgcaattaaccacaaatttg-- |
248 |
Q |
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| T |
1908109 |
acacaattcaaataagtgtttaattacgtccagtgactgatttgtcaagtgtcacaactcattcatcgtccactcgat-gcaattaaccacaaatttgaa |
1908011 |
T |
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| Q |
249 |
-----ttaacttcggtttacaagggtatataggaacttaaattatgattaatgaataccatttatatttgaacaca |
319 |
Q |
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| T |
1908010 |
tatcgttaaccatgattttcaagtgtatattggaactcaaattatgattaatgaatatcatttatatttgaacaca |
1907935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 507 - 552
Target Start/End: Complemental strand, 1892992 - 1892947
Alignment:
| Q |
507 |
agtatcttacagaagaaacaatggagataagtgagagattcagtcc |
552 |
Q |
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| T |
1892992 |
agtatcttacagaagaaacaatggagatgagtgagagatttagtcc |
1892947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 452
Target Start/End: Complemental strand, 1903703 - 1903646
Alignment:
| Q |
395 |
cagataattgaattgagttaaccatctaagttgatgttaaattttgatatcaaatttg |
452 |
Q |
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|||||| |||||| | |||||||||||||||||| |||||||||||||||||| |||| |
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| T |
1903703 |
cagatatttgaatcgtgttaaccatctaagttgacgttaaattttgatatcaattttg |
1903646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 452
Target Start/End: Complemental strand, 1907936 - 1907879
Alignment:
| Q |
395 |
cagataattgaattgagttaaccatctaagttgatgttaaattttgatatcaaatttg |
452 |
Q |
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| T |
1907936 |
cagatatttgaatcgtgttaaccatctaagttgacgttaaattttgatatcaattttg |
1907879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 508 - 552
Target Start/End: Complemental strand, 1888143 - 1888099
Alignment:
| Q |
508 |
gtatcttacagaagaaacaatggagataagtgagagattcagtcc |
552 |
Q |
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| T |
1888143 |
gtatcttacggaagaaacaatggagatgagtgagagatttagtcc |
1888099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 552
Target Start/End: Complemental strand, 1880847 - 1880803
Alignment:
| Q |
508 |
gtatcttacagaagaaacaatggagataagtgagagattcagtcc |
552 |
Q |
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| T |
1880847 |
gtatcttacagaagaaactatagagatgagtgagagatttagtcc |
1880803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 470
Target Start/End: Complemental strand, 8309487 - 8309409
Alignment:
| Q |
390 |
ttaaccagataattgaattgagttaaccatctaagttgatgttaaattttgatatcaaatttgtgcgtcaaaataacacaa |
470 |
Q |
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| T |
8309487 |
ttaaccacataattgaattttgttaaccatctattttgctgttgaaatttgatgtcaaatttgt--gtcaaaataacacaa |
8309409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 473
Target Start/End: Original strand, 29858689 - 29858760
Alignment:
| Q |
402 |
ttgaattgagttaaccatctaagttgatgttaaattttgatatcaaatttgtgcgtcaaaataacacaactc |
473 |
Q |
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| T |
29858689 |
ttgaactgtgttaaccatctatgttaatgttgaaatttgacgtcaaacttgtgtgtcaaaataacacaactc |
29858760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 469
Target Start/End: Original strand, 25312563 - 25312621
Alignment:
| Q |
411 |
gttaaccatctaagttgatgttaaattttgatatcaaatttgtgcgtcaaaataacaca |
469 |
Q |
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|||||| |||||| ||| ||| |||||||||| ||||||||||| |||||| ||||||| |
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| T |
25312563 |
gttaacaatctaaattgttgtcaaattttgatgtcaaatttgtgagtcaaagtaacaca |
25312621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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