View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17727_low_7 (Length: 545)
Name: NF17727_low_7
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 11 - 545
Target Start/End: Complemental strand, 11024050 - 11023516
Alignment:
| Q |
11 |
agcaaagggaaagacattctctatctcaataatacaccctaccctaaccaaacaatattagcaagttgcaaccatgtcaccggcagagacagtaaacaac |
110 |
Q |
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| T |
11024050 |
agcaaagggaaagacattctctatctcaataatacaccctaccctaaccaaacaatattagcaagttgcaaccatgtcaccggcagagacagtaaacaac |
11023951 |
T |
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| Q |
111 |
ccggagaagcataccctagatttcagcactagatataaacagtgactaatgcctgctaaaaattaaagtggaccagcaaaaccaaaaacaatagggtaca |
210 |
Q |
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| T |
11023950 |
ccggagaagcataccctagatttcagcactagatataaacagtgactaatgcctgctaaaaattaaagtggaccaacaaaaccaaaaaaaatagggtaca |
11023851 |
T |
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| Q |
211 |
cattgctacaagagaaggtgcaaaaacagacaaataacaaatggatgtacatggctccaccactatgaacttgaatggtaaaaggaactgaacatggcct |
310 |
Q |
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| T |
11023850 |
cattgctacaagagatggtgcaaaaacagacaaataacaaatggatgtacatggctccaccactatgaacttgaatggtaaaaggaactgaacatggcct |
11023751 |
T |
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| Q |
311 |
cccaaggaccccagttgccacaacaaatacataaaaaagttgggtccaattctaccgtacccaagaaaatgaatctcctaaagtcagttaccttgaaaat |
410 |
Q |
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| T |
11023750 |
cccaaggaccccagttgccacaacaaatacataaaaaagttgggtccaattctaccgtacccaagaaaatgaatctcctaaagtcagttaccttgaaaat |
11023651 |
T |
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| Q |
411 |
cgagtaaaaagctgtgtggtaaaagaacaggatacaaaaaagtttacccctgaactactttctagatacactacagagtaaagaagtactagtatatgtt |
510 |
Q |
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| T |
11023650 |
cgagtaaaaagctgtgtggtaaaagaacaggatacaaaaaagtttacccctgaactactttctagatacactacagagtaaagaagtactagcatatgtt |
11023551 |
T |
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| Q |
511 |
gcccaacaatgtctagtcacctgtctgacacatat |
545 |
Q |
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| T |
11023550 |
gcccaacaatgtctagtcacctgtctgacacatat |
11023516 |
T |
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