View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17727_low_8 (Length: 539)
Name: NF17727_low_8
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 18 - 539
Target Start/End: Complemental strand, 6084561 - 6084040
Alignment:
| Q |
18 |
caacttttctgcatctgtgcacattccaactttagcttcattttcactttgtgtctcatcccaatcaaatttctttttgatcgcatcctccatacttgaa |
117 |
Q |
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| T |
6084561 |
caacttttctgcatctgtgcacattccaactttagcttcattttcactttgtgtctcatcccaatcaaatttctttttgatggcatcctccatacttgaa |
6084462 |
T |
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| Q |
118 |
acatcccaaagcgaaaagcagtgattgataatccattccatggttgtagttagttctgtggcaaatctttcattatcagccttgccatccagtatactgt |
217 |
Q |
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| T |
6084461 |
acatcccaaagcgaaaagcagtgattgataatccattccatggttgtagttagttctgtggcaaatctttcatgatcagccttgccatccagtatactgt |
6084362 |
T |
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| Q |
218 |
aacacatattgagaaatttctgtaagacatccctgaaatcggatgttttccactgaaaagcacggaccatgaagggatttgaattgtcgttatcgtcaac |
317 |
Q |
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| T |
6084361 |
aacacatattgagaaatttctgtaagacatccctgaaatcggatgttttccactgaaaagcacggaccatgaagggatttgaattgtcgttatcgtcaac |
6084262 |
T |
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| Q |
318 |
aggcatgttgatcccttcaataagctcaatcattttacctattgatttattcagatctttttgacattgtgctctagttctctttatcaatgaagtctcg |
417 |
Q |
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| T |
6084261 |
aggcatgttgatcccttcaataagctcaatcattttacctattgatttattcagatctttttgacattgtgttctagctctctttatcaatgaagtctcg |
6084162 |
T |
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| Q |
418 |
gcattagatggatcaaattgacaataatctttgcctgaatctaatgcgcgttgatctggatcattcaggtgctttatagccaatttaatatcctcaagta |
517 |
Q |
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| T |
6084161 |
gcattagatggatcaaattgacaataatctttgcctgaatctaatgcgcgttgatctggatcattcaggtgctttatagccaatttaatatcctcaagta |
6084062 |
T |
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| Q |
518 |
catcatcagggttaaaatcagt |
539 |
Q |
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| T |
6084061 |
catcatcagggttaaaatcagt |
6084040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 52 - 288
Target Start/End: Original strand, 39106435 - 39106671
Alignment:
| Q |
52 |
gcttcattttcactttgtgtctcatcccaatcaaatttctttttgatcgcatcctccatacttgaaacatcccaaagcgaaaagcagtgattgataatcc |
151 |
Q |
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| T |
39106435 |
gcttcactttcgcttcgtgtctcatcccaatcaaattgtttcttgatggcatccttcatacaagaaacatcctgaagtgaaaagcagtgattcattatcc |
39106534 |
T |
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| Q |
152 |
attccatggttgtagttagttctgtggcaaatctttcattatcagccttgccatccagtatactgtaacacatattgagaaatttctgtaagacatccct |
251 |
Q |
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| T |
39106535 |
aatccaaggctgttgttagttcttcagcaaatttttcatgatcaaccttgccgttcagtaaatcataacacacatgtagaaattgctgtaaaatgttgct |
39106634 |
T |
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| Q |
252 |
gaaatcggatgttttccactgaaaagcacggaccatg |
288 |
Q |
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| T |
39106635 |
gagttcagatgttttccattggaaaacacggaccatg |
39106671 |
T |
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