View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17727_low_9 (Length: 510)
Name: NF17727_low_9
Description: NF17727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17727_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Complemental strand, 41359988 - 41359537
Alignment:
| Q |
19 |
gaggcttttaagaaagtgactctggacaattgttcagatgcttgtgattgtcttctaacagaattgaaaagaagtgtatccttccggtacaacttttctt |
118 |
Q |
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| T |
41359988 |
gaggcttttaagaaagtgactctggacaattgttcagatgcttgtgattgtcttctaacagaattgaaaagaagtgtatccttccggtacaacttttctt |
41359889 |
T |
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| Q |
119 |
aggatccttgctcttcttactgttcatcattcataggttctaagacacacttgatatttttgaatggtataatactcctacactcctaaatatacacaaa |
218 |
Q |
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| T |
41359888 |
aggatccttgcccttcttactgttcatcattcataggttctaagacacacttgatatttttgaatggtataatactcctacacttctaaatatacacaaa |
41359789 |
T |
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| Q |
219 |
aattcaaatgtatttgttcgaaannnnnnnnnnnnatttatatttcagatcaaagagaatacatctgattgaaaatgattctctagactaacttgtgttg |
318 |
Q |
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| T |
41359788 |
aattcaaatgtatttgttcgaaa-tttgactttttatttatatttcagatcaaagagaatacatctcatggaaaatgattctctagactaacttgtgttg |
41359690 |
T |
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| Q |
319 |
gtcagaaagttcgagaagtttaaccaaaaagtataccaccatcagaaatcaaacacgggtatgagccgagcctgtccctcaaaatggaaggcctagcacc |
418 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41359689 |
gtcggaaagttcgagaagtttaaccaaaaagtataccaccatcagaaatcaaacacgggtatgagccgagcctgtccctcaaaatggaaggcctagcacc |
41359590 |
T |
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| Q |
419 |
tagccttatgattgttgagcgcatggtttaaaattgtggtcgctgttacattg |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41359589 |
tagccttatgattgttgagcgcatggtttaaaattgtggtcgctgttatattg |
41359537 |
T |
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