View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17728_high_2 (Length: 253)

Name: NF17728_high_2
Description: NF17728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17728_high_2
NF17728_high_2
[»] chr8 (9 HSPs)
chr8 (13-253)||(5875037-5875277)
chr8 (68-166)||(5873172-5873270)
chr8 (60-131)||(35885335-35885406)
chr8 (59-131)||(39656892-39656964)
chr8 (61-127)||(788026-788092)
chr8 (90-148)||(27322548-27322606)
chr8 (60-140)||(1488455-1488535)
chr8 (60-137)||(510452-510529)
chr8 (59-128)||(35886091-35886160)
[»] chr4 (15 HSPs)
chr4 (59-127)||(35428141-35428209)
chr4 (90-212)||(32449346-32449468)
chr4 (61-131)||(24471830-24471900)
chr4 (91-212)||(31910584-31910705)
chr4 (61-166)||(17979057-17979162)
chr4 (59-127)||(5825332-5825400)
chr4 (61-149)||(38320420-38320508)
chr4 (65-131)||(38321280-38321346)
chr4 (60-128)||(24472588-24472656)
chr4 (61-165)||(32894644-32894748)
chr4 (61-131)||(17978263-17978333)
chr4 (61-131)||(37142690-37142760)
chr4 (56-165)||(49346101-49346211)
chr4 (59-149)||(49708685-49708775)
chr4 (60-155)||(55879793-55879889)
[»] chr1 (14 HSPs)
chr1 (62-130)||(4124701-4124769)
chr1 (61-127)||(51977180-51977246)
chr1 (61-119)||(4125407-4125465)
chr1 (60-166)||(51610164-51610270)
chr1 (60-165)||(51129372-51129477)
chr1 (103-166)||(29152292-29152355)
chr1 (60-130)||(11032198-11032268)
chr1 (62-130)||(49961460-49961528)
chr1 (60-111)||(15374695-15374746)
chr1 (90-165)||(49420113-49420188)
chr1 (60-119)||(49959953-49960012)
chr1 (61-107)||(3788435-3788481)
chr1 (60-130)||(11426852-11426922)
chr1 (61-130)||(11031431-11031500)
[»] chr6 (4 HSPs)
chr6 (59-190)||(3802729-3802860)
chr6 (60-199)||(3802063-3802201)
chr6 (61-165)||(1528561-1528665)
chr6 (63-148)||(1529372-1529457)
[»] chr7 (14 HSPs)
chr7 (91-212)||(29006377-29006499)
chr7 (91-211)||(29007095-29007217)
chr7 (69-131)||(34996885-34996947)
chr7 (61-109)||(25530377-25530423)
chr7 (60-166)||(34367361-34367466)
chr7 (86-176)||(34997674-34997764)
chr7 (91-167)||(23632953-23633028)
chr7 (60-111)||(9378728-9378779)
chr7 (61-131)||(3820394-3820464)
chr7 (61-111)||(9379793-9379843)
chr7 (60-165)||(38315783-38315888)
chr7 (60-165)||(41712964-41713069)
chr7 (100-176)||(12924148-12924224)
chr7 (75-127)||(42607095-42607147)
[»] chr5 (10 HSPs)
chr5 (61-130)||(1282946-1283015)
chr5 (61-119)||(1282254-1282312)
chr5 (59-166)||(39949490-39949597)
chr5 (61-98)||(42310849-42310886)
chr5 (100-167)||(6903210-6903277)
chr5 (60-131)||(39950311-39950382)
chr5 (90-127)||(4789549-4789586)
chr5 (61-137)||(30003538-30003614)
chr5 (91-155)||(39149423-39149487)
chr5 (61-165)||(41784622-41784726)
[»] chr2 (11 HSPs)
chr2 (61-176)||(5505153-5505268)
chr2 (61-127)||(5504344-5504410)
chr2 (61-166)||(2992798-2992903)
chr2 (90-165)||(30545379-30545454)
chr2 (61-98)||(42946480-42946517)
chr2 (61-137)||(6197915-6197991)
chr2 (61-165)||(17947880-17947984)
chr2 (61-131)||(2992002-2992072)
chr2 (61-107)||(26021913-26021959)
chr2 (100-165)||(8146599-8146664)
chr2 (90-130)||(34617682-34617722)
[»] chr3 (7 HSPs)
chr3 (59-111)||(42146798-42146849)
chr3 (61-111)||(42147546-42147596)
chr3 (61-107)||(50306525-50306571)
chr3 (60-109)||(7359842-7359891)
chr3 (61-165)||(1128170-1128274)
chr3 (61-109)||(23379332-23379380)
chr3 (66-110)||(53393212-53393256)
[»] scaffold0016 (1 HSPs)
scaffold0016 (61-111)||(67247-67297)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 5875277 - 5875037
Alignment:
Q  13 aatattcaaaagaaataaataaataacattgagagcgctaatgaagtaggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgt 112  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5875277 aatattcaaaagaaataaataaataacattgggagcgctaatgaagtaggtggcatttagggtgggaatggggaagagttttccactatgggaaagttgt 5875178  T
Q  113 tcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacacttgattattttgctttctctttcaccattttcttcaacctccatcac 212  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  5875177 tcttgaccattaaattaaaaaggaatacagattttatgatggtatgtccacacttgatttttttactttctctttcaccattttcttcaacctccatcac 5875078  T
Q  213 aaacgataccacccactcaccaccaccagcaactacaacaa 253  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  5875077 aaacgatgccacccactcaccaccaccagcaactacaacaa 5875037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 5873172 - 5873270
Alignment:
Q  68 tttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacact 166  Q
    ||||||||||||||| | |||||||||| |||||||||||||  |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  5873172 tttagggtgggaatgagaaagagtttccaactatgggaaagtatttcttgaccattagattaaaaaggaacacatattttatgatggtctgtccacact 5873270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 35885335 - 35885406
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 131  Q
    ||||||||||||||||||||||||  ||||||||||||| || | |||||  || |||||||||||||||||    
T  35885335 aggtggcatttagggtgggaatggaaaagagtttcccaccatagaaaagtctttattgaccattagattaaa 35885406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 39656964 - 39656892
Alignment:
Q  59 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 131  Q
    |||||||||||||||||||| | ||| |||||||||| ||||| |||||||| || || |||| |||||||||    
T  39656964 taggtggcatttagggtgggtaggggaaagagtttcctactataggaaagtttttttttaccaatagattaaa 39656892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 788026 - 788092
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagat 127  Q
    |||||||||||||||||||||||| || |||||||||| || | |||||| ||  ||||||||||||    
T  788026 ggtggcatttagggtgggaatgggaaaaagtttcccaccatagcaaagttttttctgaccattagat 788092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 27322606 - 27322548
Alignment:
Q  90 gtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagatttta 148  Q
    ||||||||| ||||||||||| ||||||||||||| |||||| |||  |||||||||||    
T  27322606 gtttcccacgatgggaaagttattcttgaccattaaattaaagaggtgtacagatttta 27322548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 1488535 - 1488455
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatac 140  Q
    |||||||||||||| |||||| ||| |||||||| |||| || ||||||||| | | ||||||| ||| ||| ||||||||    
T  1488535 aggtggcatttaggatgggaaggggaaagagttttccaccataggaaagttgatttggaccattggatcaaataggaatac 1488455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 510452 - 510529
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaa 137  Q
    ||||||||||||| ||||| | ||| |||| || |||| ||||||||||| ||| || ||||||| |||||| |||||    
T  510452 aggtggcatttagagtgggtaagggaaagaattccccattatgggaaagtagtttttaaccattaaattaaataggaa 510529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 35886160 - 35886091
Alignment:
Q  59 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagatt 128  Q
    ||||||||||||||||| ||||| || |||||||||||||  |  |||| | ||| ||||||||||||||    
T  35886160 taggtggcatttagggtaggaataggaaagagtttcccaccgtaagaaaatagtttttgaccattagatt 35886091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 35428209 - 35428141
Alignment:
Q  59 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagat 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  35428209 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcatgaccatcagat 35428141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 32449346 - 32449468
Alignment:
Q  90 gtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacacttgattattttgctttctctttca 189  Q
    ||||||||| |||| ||| |  || ||||| ||||||||||| ||||||||  ||||||| ||||| | ||||||||  ||| |||  ||||||||||||    
T  32449346 gtttcccaccatggaaaaatattttttgacaattagattaaagaggaataccaattttatcatggtctatccacactatattttttctctttctctttca 32449445  T
Q  190 ccattttcttcaacctccatcac 212  Q
    |||||||||||||||||||||||    
T  32449446 ccattttcttcaacctccatcac 32449468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 24471830 - 24471900
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 131  Q
    |||||||||||||||||||||||  ||||||||||||| || |||||||  || |||||||||||||||||    
T  24471830 ggtggcatttagggtgggaatggaaaagagtttcccaccataggaaagtctttattgaccattagattaaa 24471900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 31910584 - 31910705
Alignment:
Q  91 tttcccactatgggaaagtt-gttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacacttgattattttgctttctctttca 189  Q
    |||||||| ||||||||||| ||| || ||||||| |||||| |||| ||   ||||||| ||||| | || |||||  ||| |||  ||||||||||||    
T  31910584 tttcccaccatgggaaagttagtttttaaccattaaattaaagaggagtatcaattttatcatggtctatc-acactatattttttctctttctctttca 31910682  T
Q  190 ccattttcttcaacctccatcac 212  Q
    |||||||||||||||||||||||    
T  31910683 ccattttcttcaacctccatcac 31910705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 17979162 - 17979057
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 160  Q
    ||||||||||||||||||   ||| |||||||| ||||||||| |||||| || |  |||||||||||| | |||| ||| |||||||| |||| ||||     
T  17979162 ggtggcatttagggtgggtgagggaaagagttttccactatggaaaagtttttttataccattagattagagaggagtactgattttatcatgggttgtg 17979063  T
Q  161 cacact 166  Q
    ||||||    
T  17979062 cacact 17979057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 5825332 - 5825400
Alignment:
Q  59 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagat 127  Q
    |||||||||||||||||||||||||| ||||||||||||| || | |||||| ||  | ||||||||||    
T  5825332 taggtggcatttagggtgggaatgggaaagagtttcccaccatagcaaagttttttctaaccattagat 5825400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 38320420 - 38320508
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttat 149  Q
    ||||||||||||||||||||  || ||||||||||||| | ||||||||  || |||||||||| |||| | |||| ||| ||||||||    
T  38320420 ggtggcatttagggtgggaagaggaaagagtttcccaccacgggaaagtgttttttgaccattaaattagagaggagtaccgattttat 38320508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 38321346 - 38321280
Alignment:
Q  65 gcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 131  Q
    |||||||||||||||| ||  |||||||||||| ||| |||||||  || |||||||||||||||||    
T  38321346 gcatttagggtgggaagggaaaagagtttcccattataggaaagtgatttttgaccattagattaaa 38321280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 24472656 - 24472588
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagatt 128  Q
    |||||||||||||||||||||| || |||||||||||||  |  |||| | ||| ||||||||||||||    
T  24472656 aggtggcatttagggtgggaataggaaagagtttcccaccgtaagaaaatagtttttgaccattagatt 24472588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 32894748 - 32894644
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 160  Q
    ||||||||||||| ||||   ||| |||||||||| ||||||||| |||| || || ||||| |||||||| |||   ||||||||||  ||||| ||||    
T  32894748 ggtggcatttaggatgggtgagggaaagagtttcctactatgggagagtttttttttaccataagattaaagaggtgcacagattttaaaatggtctgtc 32894649  T
Q  161 cacac 165  Q
    |||||    
T  32894648 cacac 32894644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 17978263 - 17978333
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 131  Q
    ||||||||||||||||||   ||| ||||||||||||  ||||||||||| || ||  |||||||||||||    
T  17978263 ggtggcatttagggtgggcgggggaaagagtttcccaacatgggaaagttatttttagccattagattaaa 17978333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 37142760 - 37142690
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 131  Q
    ||||||||||||||||||   ||| ||||||||||||  ||||||||||| || ||  |||||||||||||    
T  37142760 ggtggcatttagggtgggtgggggaaagagtttcccaacatgggaaagttatttttagccattagattaaa 37142690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 49346101 - 49346211
Alignment:
Q  56 aagtaggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg-ttcttgaccattagattaaaaaggaatacagattttatgatgg 154  Q
    |||||||||||||||||||||||   ||| |||| ||| |||  |||||||||||| || || ||||||||||||||  |||  || |||||||| ||||    
T  49346101 aagtaggtggcatttagggtgggtgagggaaagaattttccatcatgggaaagttgattgtttaccattagattaaattggagcactgattttatcatgg 49346200  T
Q  155 tttgtccacac 165  Q
    | | |||||||    
T  49346201 tctatccacac 49346211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 49708775 - 49708685
Alignment:
Q  59 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttat 149  Q
    ||||||||||||||||||||   ||| |||| |||||||| |||| ||||| | |  || ||||||||||||| ||||| | |||||||||    
T  49708775 taggtggcatttagggtgggtgagggaaagaatttcccaccatggaaaagtagattatgcccattagattaaagaggaacatagattttat 49708685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 55879793 - 55879889
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg-ttcttgaccattagattaaaaaggaatacagattttatgatggt 155  Q
    |||||||||||||||||||   ||| || | |||||||| |||||||||||| || || ||| ||||||||||  ||| ||| |||||||| |||||    
T  55879793 aggtggcatttagggtgggtgagggaaataatttcccaccatgggaaagttgtttgtttaccgttagattaaagtggagtactgattttatcatggt 55879889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 4124701 - 4124769
Alignment:
Q  62 gtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaa 130  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||  |||||||||||||||    
T  4124701 gtggcatttagggtgggaatgggaaagagtttcccactatgggaaagttttttctgaccattagattaa 4124769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 51977246 - 51977180
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagat 127  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||||| ||||    
T  51977246 ggtggcatttagggtggaaatgggaaagagttttccactatgggaaagttgttcatgaccatcagat 51977180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 4125465 - 4125407
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgac 119  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||  |||||||    
T  4125465 ggtggcatttagggtgggaatgggaaagagtttcccactataggaaagttaatcttgac 4125407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 51610270 - 51610164
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgt 159  Q
    ||||||||||||||||||| | | |||| | |||||||| ||||||||||| || |  |||| ||||||| | |||||||| |||||||| |||| ||||    
T  51610270 aggtggcatttagggtgggtaggaggaatattttcccaccatgggaaagtttttttataccactagattagagaggaatactgattttatcatgggttgt 51610171  T
Q  160 ccacact 166  Q
     ||||||    
T  51610170 gcacact 51610164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 51129372 - 51129477
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgt 159  Q
    |||||||||||||||||||   ||| ||||||||||||||||||||||||| ||  | ||||| |||||||| |||   ||||||||||  ||||| | |    
T  51129372 aggtggcatttagggtgggtgagggaaagagtttcccactatgggaaagttttttcttaccataagattaaagaggtgcacagattttaaaatggtctct 51129471  T
Q  160 ccacac 165  Q
    ||||||    
T  51129472 ccacac 51129477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 29152355 - 29152292
Alignment:
Q  103 ggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacact 166  Q
    |||||||| ||  |||||||| ||||||| |||| || ||||||||||||||||||||||||||    
T  29152355 ggaaagttttttatgaccattggattaaataggattatagattttatgatggtttgtccacact 29152292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 11032268 - 11032198
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaa 130  Q
    ||||||||||||   |||||| |||||| |||||||||| ||||||||||||   ||||||||||||||||    
T  11032268 aggtggcatttaacatgggaaaggggaatagtttcccaccatgggaaagttgaatttgaccattagattaa 11032198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 49961528 - 49961460
Alignment:
Q  62 gtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaa 130  Q
    ||||||||||||||||||||||  |||||||| | ||||||| |||||| ||  |||| ||||||||||    
T  49961528 gtggcatttagggtgggaatggaaaagagttttctactatggaaaagttttttctgacaattagattaa 49961460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 15374746 - 15374695
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg 111  Q
    ||||||||||||||||||||| ||| |||| |||||||| ||||| ||||||    
T  15374746 aggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttg 15374695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 49420113 - 49420188
Alignment:
Q  90 gtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacac 165  Q
    ||||||||  ||||||||| | || ||||||||||||||||| |||   ||| ||||||||||||| |||||||||    
T  49420113 gtttcccatgatgggaaagctttttttgaccattagattaaataggtgcacacattttatgatggtctgtccacac 49420188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 49959953 - 49960012
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgac 119  Q
    |||||||||||||||||| |||| | |||||||||| ||||| ||||||||  |||||||    
T  49959953 aggtggcatttagggtggaaatgagaaagagtttcctactataggaaagttaatcttgac 49960012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 3788435 - 3788481
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaa 107  Q
    |||||||||||||||||||| ||| ||||||||||||| || |||||    
T  3788435 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 3788481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 11426852 - 11426922
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaa 130  Q
    |||||||||||||  ||| || ||| ||||||||||||| ||||||||| |  | ||||||||||||||||    
T  11426852 aggtggcatttagcatggaaaagggaaagagtttcccaccatgggaaagctaattttgaccattagattaa 11426922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 11031431 - 11031500
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaa 130  Q
    |||||||||||   |||||| |||||| |||||||||| |||||||||||    ||||||||||||||||    
T  11031431 ggtggcatttaacatgggaaaggggaatagtttcccaccatgggaaagttaaatttgaccattagattaa 11031500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 190
Target Start/End: Complemental strand, 3802860 - 3802729
Alignment:
Q  59 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttg 158  Q
    |||||||||||||||||||||||||| |||| |||| |||||||||||| || || |  ||||||| |||| ||||||| || |||||||| ||||| |     
T  3802860 taggtggcatttagggtgggaatgggaaagaatttctcactatgggaaacttattttataccattaaattagaaaggaacactgattttatcatggtctt 3802761  T
Q  159 tccacacttgattattttgctttctctttcac 190  Q
    ||||||||  ||| | || |||||||||||||    
T  3802760 tccacactatattttcttcctttctctttcac 3802729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 3802063 - 3802201
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgt 159  Q
    ||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||| |  | ||||||||||| |||||| |   ||||||| ||||| | |    
T  3802063 aggtggcatttagggtgggaacgggaaagagtttcacactatggaaaagttgttttacatcattagattaagaaggaacattaattttatcatggtcttt 3802162  T
Q  160 ccacacttgattattttgctttctctttcaccattttctt 199  Q
    | |||||  ||| |||| |||||||||||| |||||||||    
T  3802163 ctacactatatttttttcctttctctttca-cattttctt 3802201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 1528561 - 1528665
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 160  Q
    ||||||||||||||||||   ||| ||||||||||||||||||||||||| ||  | ||||| |||||||| |||   ||||||||||  ||||| | ||    
T  1528561 ggtggcatttagggtgggtgagggaaagagtttcccactatgggaaagttttttcttaccataagattaaagaggtgcacagattttaaaatggtctatc 1528660  T
Q  161 cacac 165  Q
    |||||    
T  1528661 cacac 1528665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 1529457 - 1529372
Alignment:
Q  63 tggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagatttta 148  Q
    ||||||||||||||||   ||| ||||||||||||| ||| ||||||| ||  ||||||| |||||||| |||   ||||||||||    
T  1529457 tggcatttagggtgggtgagggaaagagtttcccaccatgagaaagttttttctgaccataagattaaataggtgcacagatttta 1529372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 29006377 - 29006499
Alignment:
Q  91 tttcccactatgggaaagtt-gttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacacttgattattttgctttctctttca 189  Q
    |||||||| ||||||||||| ||| || |||||||||||||| |||| |||  ||||||| ||||| | ||||||||  ||| |||  ||||||||||||    
T  29006377 tttcccaccatgggaaagttagtttttaaccattagattaaagaggagtaccaattttatcatggtctatccacactatattttttctctttctctttca 29006476  T
Q  190 ccattttcttcaacctccatcac 212  Q
    |||| ||||||||||||||||||    
T  29006477 ccatcttcttcaacctccatcac 29006499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 29007217 - 29007095
Alignment:
Q  91 tttcccactatgggaaagtt-gttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacacttgattattttg-ctttctctttc 188  Q
    |||||||| ||||||||||| ||| || |||||||||||||| |||| |||  ||||||| ||||| | ||||||||  ||| ||||  |||||||||||    
T  29007217 tttcccaccatgggaaagttagtttttaaccattagattaaagaggagtactaattttatcatggtctatccacactatatttttttctctttctctttc 29007118  T
Q  189 accattttcttcaacctccatca 211  Q
    |||||||||||||||||||||||    
T  29007117 accattttcttcaacctccatca 29007095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 34996885 - 34996947
Alignment:
Q  69 ttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 131  Q
    |||||||||||||| | ||||||||||||||||||||||||  || |||| ||||||||||||    
T  34996885 ttagggtgggaatgagaaagagtttcccactatgggaaagtgatttttgatcattagattaaa 34996947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 25530423 - 25530377
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagt 109  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||    
T  25530423 ggtggcatttagggtgggaatggg--agagtttcccactatgggaaagt 25530377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 166
Target Start/End: Original strand, 34367361 - 34367466
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgt 159  Q
    |||||||||||||||||||   ||| |||||||| ||||||||| |||||| || |  |||||||||||| | |||| ||| |||||||| |||| ||||    
T  34367361 aggtggcatttagggtgggtgagggaaagagttttccactatggaaaagtt-ttttataccattagattagagaggagtactgattttatcatgggttgt 34367459  T
Q  160 ccacact 166  Q
     ||||||    
T  34367460 gcacact 34367466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 34997764 - 34997674
Alignment:
Q  86 aagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacacttgattatttt 176  Q
    |||||||||||||||| |||||||  || ||||||||||||||| | |||| ||  |||||||| |||| |||| ||||||  ||||||||    
T  34997764 aagagtttcccactataggaaagtgttttttgaccattagattagagaggagtatcgattttatcatgggttgtgcacactatattatttt 34997674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 23632953 - 23633028
Alignment:
Q  91 tttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacactt 167  Q
    |||||||| |||| |||||| || || |||||||||||||| |||| || ||||||||||||||| || ||||||||    
T  23632953 tttcccaccatggaaaagtttttttt-accattagattaaagaggagtatagattttatgatggtctgcccacactt 23633028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 9378728 - 9378779
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg 111  Q
    ||||||||||||||||||||| ||| |||| ||| |||| ||||||||||||    
T  9378728 aggtggcatttagggtgggaaggggaaagatttttccaccatgggaaagttg 9378779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 3820394 - 3820464
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 131  Q
    |||||||||||||||||| | | | |||||||||| ||||| |||||||| || || |||| |||||||||    
T  3820394 ggtggcatttagggtgggtaggtgaaagagtttcctactataggaaagtttttttttaccaatagattaaa 3820464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 9379843 - 9379793
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg 111  Q
    |||||||||||||||||||  ||| |||| ||| |||||||||||||||||    
T  9379843 ggtggcatttagggtgggatggggaaagatttttccactatgggaaagttg 9379793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 38315783 - 38315888
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgt 159  Q
    |||||||||||||||||||   ||| |||||||||| ||||||| |||||| ||  | ||||| |||||||| | |   ||||||||||  ||||| |||    
T  38315783 aggtggcatttagggtgggtgagggaaagagtttcctactatggaaaagttttttcttaccataagattaaagaagtgcacagattttaaaatggtctgt 38315882  T
Q  160 ccacac 165  Q
    ||||||    
T  38315883 ccacac 38315888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 41712964 - 41713069
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgt 159  Q
    |||||||||||||||||||   | | ||||||||| ||||||||||||||| ||  | ||||| |||||||| |||   ||||||||||  ||||| | |    
T  41712964 aggtggcatttagggtgggtgagagaaagagtttctcactatgggaaagttttttcttaccataagattaaagaggtgcacagattttaaaatggtctct 41713063  T
Q  160 ccacac 165  Q
    ||||||    
T  41713064 ccacac 41713069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 12924224 - 12924148
Alignment:
Q  100 atgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacacttgattatttt 176  Q
    ||||||||||| || || ||||||| |||||| |||| || ||||||||||||||| || |||| ||| || |||||    
T  12924224 atgggaaagtttttttttaccattaaattaaagaggagtatagattttatgatggtctgcccacgctttataatttt 12924148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 42607095 - 42607147
Alignment:
Q  75 tgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagat 127  Q
    |||||| ||||||  ||||||||| |||||||||||||| ||| |||||||||    
T  42607095 tgggaaaggggaattgtttcccaccatgggaaagttgtttttgtccattagat 42607147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 1283015 - 1282946
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaa 130  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||| ||  |||||||||||||||    
T  1283015 ggtgacatttagggtgggaatgggaaagagtttcccactatgggaaagttttttctgaccattagattaa 1282946  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 1282254 - 1282312
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgac 119  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||    
T  1282254 ggtggcatttagggtgggaatgggaaagagtttcccactatgggaaagttaatcttgac 1282312  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 39949490 - 39949597
Alignment:
Q  59 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttg 158  Q
    ||||||||||||||||||||   ||| |||||||| ||||||||| |||||| || |  |||||||||||| | |||| ||| |||||||| |||| |||    
T  39949490 taggtggcatttagggtgggtgagggaaagagttttccactatggaaaagtttttttataccattagattagagaggagtactgattttatcatgggttg 39949589  T
Q  159 tccacact 166  Q
    | ||||||    
T  39949590 tgcacact 39949597  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 42310849 - 42310886
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccac 98  Q
    |||||||||||||||||||||||| |||||||||||||    
T  42310849 ggtggcatttagggtgggaatgggaaagagtttcccac 42310886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 6903277 - 6903210
Alignment:
Q  100 atgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacactt 167  Q
    ||||||||||| || || | |||||||||||| |||| || ||||||||||||||| || ||||||||    
T  6903277 atgggaaagtttttttttatcattagattaaagaggagtatagattttatgatggtctgcccacactt 6903210  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 39950382 - 39950311
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 131  Q
    |||||||||||||||||||   ||| ||||||||||||  ||||||||||| || ||  |||||||||||||    
T  39950382 aggtggcatttagggtgggcgggggaaagagtttcccaacatgggaaagttatttttagccattagattaaa 39950311  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 4789549 - 4789586
Alignment:
Q  90 gtttcccactatgggaaagttgttcttgaccattagat 127  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  4789549 gtttcccaccatgggaaagttattcttgaccattagat 4789586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 30003614 - 30003538
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaa 137  Q
    |||||||||||||||||| | ||| |||||||||| || ||   ||||||| | ||||||||||||| ||| |||||    
T  30003614 ggtggcatttagggtgggtaagggaaagagtttcctaccataaaaaagttgattttgaccattagatcaaataggaa 30003538  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 39149487 - 39149423
Alignment:
Q  91 tttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggt 155  Q
    |||||||| ||||||||||| || || |||||||||||| | | ||| | |||||||||||||||    
T  39149487 tttcccaccatgggaaagtttttttttaccattagattagagatgaacatagattttatgatggt 39149423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 41784622 - 41784726
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 160  Q
    ||||||||||||||||||   ||| |||||||| | |||||||||||||| ||  | ||||| |||||||| |||   ||||||||||  ||||| | ||    
T  41784622 ggtggcatttagggtgggtgagggaaagagttttctactatgggaaagttttttcttaccataagattaaagaggtgcacagattttaaaatggtctctc 41784721  T
Q  161 cacac 165  Q
    |||||    
T  41784722 cacac 41784726  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 176
Target Start/End: Complemental strand, 5505268 - 5505153
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 160  Q
    ||||||||||||||||||||  || |||||||| |||| ||||||||||  || ||||||||||||||| | |||| ||| ||||| || |||| ||||     
T  5505268 ggtggcatttagggtgggaagaggaaagagttttccaccatgggaaagtgttttttgaccattagattagagaggagtaccgatttcatcatgggttgtg 5505169  T
Q  161 cacacttgattatttt 176  Q
    ||||||  ||||||||    
T  5505168 cacactatattatttt 5505153  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 5504344 - 5504410
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagat 127  Q
    |||||||||||||||||||| ||| |||||||||||||||| | |||||  || |||||||||||||    
T  5504344 ggtggcatttagggtgggaaggggaaagagtttcccactatagaaaagtgatttttgaccattagat 5504410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 2992903 - 2992798
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 160  Q
    ||||||||||||||||||   ||| |||||||| ||||||||| |||||| || |  |||||||||||| | |||| ||| |||||||| |||| ||||     
T  2992903 ggtggcatttagggtgggtgagggaaagagttttccactatggaaaagtttttttataccattagattagagaggagtactgattttatcatgggttgtg 2992804  T
Q  161 cacact 166  Q
    ||||||    
T  2992803 cacact 2992798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 30545454 - 30545379
Alignment:
Q  90 gtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacac 165  Q
    ||||||||  ||||||||||| || || |||||||||||||| |||   ||| |||||||||||||||||||||||    
T  30545454 gtttcccatgatgggaaagttttttttaaccattagattaaagaggtgcacacattttatgatggtttgtccacac 30545379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 42946517 - 42946480
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccac 98  Q
    |||||||||||||||||||||||| |||||||||||||    
T  42946517 ggtggcatttagggtgggaatgggaaagagtttcccac 42946480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 6197915 - 6197991
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaa 137  Q
    |||||||||||||||||| | ||| |||| || |||| ||||||||||| ||| || ||||||| |||||| |||||    
T  6197915 ggtggcatttagggtgggtaagggaaagaattccccattatgggaaagtagtttttaaccattaaattaaataggaa 6197991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 17947984 - 17947880
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 160  Q
    ||||||||||||| ||||   ||| |||||||||||||||||||| |||| || || ||||| |||||||| |||   | ||||||||  ||||| ||||    
T  17947984 ggtggcatttaggatgggtgagggaaagagtttcccactatgggagagtttttttttaccataagattaaagaggtgcatagattttaaaatggtctgtc 17947885  T
Q  161 cacac 165  Q
    |||||    
T  17947884 cacac 17947880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 2992002 - 2992072
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaa 131  Q
    ||||||||||||||||||   ||| ||||||||||||  ||||||||||| || ||  |||||||||||||    
T  2992002 ggtggcatttagggtgggcgggggaaagagtttcccaacatgggaaagttatttttagccattagattaaa 2992072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 26021959 - 26021913
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaa 107  Q
    |||||||||||||||||||| ||| ||||||||||||| || |||||    
T  26021959 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 26021913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 8146664 - 8146599
Alignment:
Q  100 atgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtccacac 165  Q
    ||||||||||| || || |||||||||||||| |||   | | |||||||||||||||||||||||    
T  8146664 atgggaaagttttttttaaccattagattaaagaggtgcatacattttatgatggtttgtccacac 8146599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 34617682 - 34617722
Alignment:
Q  90 gtttcccactatgggaaagttgttcttgaccattagattaa 130  Q
    ||||||||| ||||||||||| || ||||||||||||||||    
T  34617682 gtttcccaccatgggaaagttatttttgaccattagattaa 34617722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 42146798 - 42146849
Alignment:
Q  59 taggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg 111  Q
    |||||||||||||||||||| ||||| |||| |||||||| ||||||||||||    
T  42146798 taggtggcatttagggtggg-atgggaaagattttcccaccatgggaaagttg 42146849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 42147596 - 42147546
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg 111  Q
    |||||||||||||||||||| ||| |||| |||||||| ||||| ||||||    
T  42147596 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttg 42147546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 50306571 - 50306525
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaa 107  Q
    |||||||||||||||||||| ||| ||||||||||||| || |||||    
T  50306571 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 50306525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 7359891 - 7359842
Alignment:
Q  60 aggtggcatttagggtgggaatggggaagagtttcccactatgggaaagt 109  Q
    ||||||||||||||||||| | | |||||| |||||||| ||||||||||    
T  7359891 aggtggcatttagggtgggtaagaggaagactttcccaccatgggaaagt 7359842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 1128274 - 1128170
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttgttcttgaccattagattaaaaaggaatacagattttatgatggtttgtc 160  Q
    ||||||||||||||||||   | | ||||||||| ||||||||||||||| ||  | ||||| |||||||| |||   ||||||||||  ||||| | ||    
T  1128274 ggtggcatttagggtgggtgagagaaagagtttctcactatgggaaagttttttcttaccataagattaaagaggtgcacagattttaaaatggtctctc 1128175  T
Q  161 cacac 165  Q
    |||||    
T  1128174 cacac 1128170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 23379332 - 23379380
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagt 109  Q
    |||||||||||||||||| | ||| |||| ||||||||||| |||||||    
T  23379332 ggtggcatttagggtgggtaagggaaagattttcccactataggaaagt 23379380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 53393256 - 53393212
Alignment:
Q  66 catttagggtgggaatggggaagagtttcccactatgggaaagtt 110  Q
    |||||||  |||||| || ||||||||||||||||||||||||||    
T  53393256 catttagcatgggaaaggagaagagtttcccactatgggaaagtt 53393212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 67247 - 67297
Alignment:
Q  61 ggtggcatttagggtgggaatggggaagagtttcccactatgggaaagttg 111  Q
    |||||||||||||||||||| ||| |||| |||||||| ||||| ||||||    
T  67247 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttg 67297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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