View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17728_high_3 (Length: 242)
Name: NF17728_high_3
Description: NF17728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17728_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 37860215 - 37859996
Alignment:
| Q |
1 |
aaccattcatttgttcattacaagcttgnnnnnnnngaattattataataatttgctagagttttagtcagttaagcatgtgattcatctaccagttctc |
100 |
Q |
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| T |
37860215 |
aaccattcatttgttcattacaagcttgttttttt-gaattattataataatttgctagagttttagtcagttaagcatgtgattcatctaccagttctc |
37860117 |
T |
|
| Q |
101 |
tctcctcccttttcatccgcaagtatatatataccaacttctcttcagagccaatactgcaacacaccctttgctttctttctgagtccttgtttagtgg |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37860116 |
tctcctcccttttcatccgcaagtgtatatataccaacttctcttcagagccaatactgcaacacaccctttgctttctttccgagtccttgtttagtgg |
37860017 |
T |
|
| Q |
201 |
caacaaacttgctaagtcatc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
37860016 |
caacaaacttgctaagtcatc |
37859996 |
T |
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