View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17728_low_2 (Length: 471)
Name: NF17728_low_2
Description: NF17728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17728_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 5875047 - 5874782
Alignment:
| Q |
1 |
aactacaacaacaatcatgctccatgaaattaaactaaaaataatgcgattaagaaaattcaaaccccacaaactaataataatgtgattaagctaataa |
100 |
Q |
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| T |
5875047 |
aactacaacaacaatcatgctccatgaaattaaactaaaaataatgtgattaagcaaattcaaaccccacaaactaataataatgtaattaagctaataa |
5874948 |
T |
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| Q |
101 |
taacgaaattaagccatatatattgtataaacaaaacttaaattgatcgttatgaacataagtattaagattcagagcacgaattgaagaatcatcgatg |
200 |
Q |
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| T |
5874947 |
taacgaaattaagccatatgtattgtataaacaaaacttaaattgatcgttatgaacataagtattaagattcagagcacgaattgaagaatcatcgatg |
5874848 |
T |
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| Q |
201 |
aacacggtgattcaaagcagatcaataagaaagatgaagaagttgaaaacataaaatataaaatat |
266 |
Q |
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| T |
5874847 |
aacacggtgattcaaagcagatcaataagaaagatgaagaagttgaaaacagaaaatataaaatat |
5874782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 257 - 453
Target Start/End: Complemental strand, 5873686 - 5873490
Alignment:
| Q |
257 |
tataaaatatttattgacggcaacgtcgtttgcgacggaaagggggaatttgtcgtcggaggaataggatgttgtaagcggtaagttcgttgaggggagg |
356 |
Q |
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| T |
5873686 |
tataaaatatttattgacggcaacgtcgtttgcggcggaaagggggaatttgtcgtcggtggaataggatgttgtaagcggcaagttcgttgaggggagg |
5873587 |
T |
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| Q |
357 |
gcgaaacgggtgggagtgaacgacgacgaggtgatagttgcgaaggaatcaacgacgaggccaaggaaggagacgttgagagggagagtggtgtagg |
453 |
Q |
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| T |
5873586 |
acaaaacgggtgggagggaacaacgacgaggtgacagttgcgaaggaatcaacaacgaggccgaggaaggagacgttgagagggagagtggtgtagg |
5873490 |
T |
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